Table 3.
Comparison of biofilm to batch culture
| DVU Gene # | Gene Name | Description | Log2ratio (z-score) |
|---|---|---|---|
| 0429 |
echF |
Ech hydrogenase, putative subunit |
3.41 (3.91) |
| 0799 |
- |
conserved hypothetical protein |
3.02 (3.46) |
| 2342 |
- |
amino acid ABC transporter |
2.34 (2.68) |
| 1817 |
cyf |
cytochrome c553 |
2.31 (2.64) |
| 2781 |
- |
hypothetical protein |
2.30 (2.63) |
| 0797 |
- |
conserved hypothetical protein |
2.15 (2.46) |
| 0752 |
- |
amino acid ABC transporter |
1.95 (2.22) |
| 0588 |
hybA |
formate dehydrogenase, beta subunit |
1.94 (2.22) |
| A0108 |
- |
- |
1.87 (2.14) |
| 2982 |
leuC |
3-isopropoylmalate dehydratase |
1.78 (2.03) |
| 2333 |
ndk |
nucleoside dephosphate kinase |
1.77 (2.02) |
| 0465 |
trpE |
anthrnilate synthase, component I |
-1.72 (-2.00) |
| 1207 |
fabH |
3-oxyacyl-acyl-carrier protein synthase |
-1.72 (-2.00) |
| 0107 |
glnH |
glutamine periplasmic binding protein |
-1.75 (-2.04) |
| 1873 |
ppiB-2 |
peptidyl-prolyl-isomerase |
-1.78 (-2.07) |
| 0997 |
metF |
5,10-methylenetetrahydrofolate red. |
-1.79 (-2.09) |
| 3029 |
pta |
phosphate acetyltransferase |
-1.87 (-2.17) |
| 2449 |
metK |
S-adenosylmethionen synthetase |
-1.88 (-2.18) |
| 0470 |
trpB-2 |
tryptophan synthase |
-1.94 (-2.25) |
| 1095 |
argG |
argininosuccinate synthase |
-1.96 (-2.28) |
| 0462 |
- |
chorismate mutase |
-1.99 (-2.31) |
| 0607 |
ahcY |
adenosylhomocysteinase |
-2.06 (-2.40) |
| 2590 |
- |
sensory box protein |
-2.38 (-2.76) |
| 1241 |
- |
conserved hypothetical protein |
-2.55 (-2.96) |
| 3371 |
metE |
S-methyltransferase |
-2.83 (-3.28) |
| 0494 | - | aminotransferase V | -3.30 (-3.82) |
This table lists all proteins that were significantly increased or decreased (|z| ≤ 2) when biofilm cells were compared to batch, planktonic cells.