Table 4.
Comparison of biofilm to reactor, planktonic culture
| DVU Gene # | Gene Name | Description | Log2ratio (z-score) |
|---|---|---|---|
| 0799 |
- |
- |
3.65 (4.78) |
| 0797 |
- |
- |
3.08 (4.02) |
| 0587 |
fdnG-1 |
formate dehydrogenase, alpha subunit |
2.59 (3.38) |
| 1817 |
cyf |
cytochrome c553 |
2.44 (3.18) |
| 2135 |
- |
hypothetical protein |
2.39 (3.11) |
| 2442 |
- |
Hsp family |
2.30 (2.99) |
| 0251 |
- |
putative membrane protein |
2.20 (2.86) |
| 0588 |
hybA |
formate dehydrogenase, beta subunit |
2.11 (2.74) |
| 2410 |
sodB |
superoxide dismutase, Fe |
2.02 (2.63) |
| 2100 |
- |
universal stress protien |
1.85 (2.40) |
| A0115 |
- |
- |
1.81 (2.34) |
| 2543 |
b0873 |
hybrid cluster protein |
1.80 (2.34) |
| 0429 |
echF |
EchF |
1.75 (2.27) |
| 0430 |
echE |
EchE |
1.66 (2.15) |
| 2441 |
hspC |
Hsp20 family |
1.63 (2.10) |
| 1067 |
- |
Bmp family membrane protein |
1.60 (2.07) |
| 1876 |
dnaJ |
DnaJ |
1.56 (2.02) |
| 0467 |
trpD |
anthrnilate phosphoribosyltransferase |
-1.52 (-2.06) |
| 0415 |
pepA |
cytosol aminopeptidase |
-1.55 (-2.10) |
| 3027 |
glcD |
glycolate oxidase |
-1.80 (-2.43) |
| 2590 |
- |
sensory box protein |
-1.81 (-2.44) |
| 0494 |
- |
aminotransferase V |
-1.82 (-2.47) |
| 1257 |
- |
RNA-binding protein |
-2.00 (-2.69) |
| 0318 | - | TPR domain protein | -2.23 (-3.00) |
This table lists all proteins that were significantly increased or decreased (|z| ≤ 2) when biofilm cells were compared to reactor, planktonic cells.