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GENCODE lncRNAs are independent, noncoding transcripts. (A) Protein-coding potential of transcripts computed in four data sets: protein-coding (red), GENCODE v7 lncRNAs (blue), decoy lncRNAs (green), and known lncRNAs (XIST, H19…) (purple). (B) Proportion of GENCODE lncRNAs and mRNAs transcripts with CAGE clusters mapped around their transcription start sites (TSSs) (see Methods) in bins of increasing expression levels (log10 RPKM).
