Table 2:
A list of the 30 publicly available data sets used to create the experimental compendium including the GEO experiment ID, microarray platform, tissue and number of samples
| GEO ID | Platform | No. of samples | Tissue |
|---|---|---|---|
| GSE2443 | U133A | 20 | Prostate |
| GSE3585 | U133A | 12 | Heart |
| GSE4107 | U133Plus2 | 22 | Colonic mucosa |
| GSE4488 | U133Plus2 | 16 | Whole blood |
| GSE5090 | U133A | 17 | Omental adipose tissue |
| GSE5389 | U133A | 21 | Orbitofrontal cortex |
| GSE5390 | U133A | 15 | Dorsolateral prefrontal cortex |
| GSE5563 | U133Plus2 | 19 | Vulva |
| GSE6236 | U133A | 28 | Reticulocytes |
| GSE6364 | U133Plus2 | 37 | Endometrium |
| GSE6613 | U133A | 105 | Whole blood |
| GSE6872 | U133Plus2 | 21 | Semen |
| GSE7148 | U133A | 14 | Peripheral blood leukocytes |
| GSE7305 | U133Plus2 | 20 | Endometrium |
| GSE7893 | U133A | 21 | Peripheral blood CD14+ leukocytes |
| GSE8514 | U133Plus2 | 15 | Adrenal gland |
| GSE8581 | U133Plus2 | 58 | Lung |
| GSE8823 | U133Plus2 | 24 | Alveolar macrophages |
| GSE10161 | U133A | 27 | Heart |
| GSE10245 | U133Plus2 | 58 | Nonsmall cell lung cancer |
| GSE11524 | U133Plus2 | 30 | Platelet |
| GSE14001 | U133Plus2 | 23 | Ovary |
| GSE14671 | U133Plus2 | 59 | CD34+ cells |
| GSE14905 | U133Plus2 | 82 | Skin |
| GSE16155 | U133Plus2 | 19 | Ependymoma |
| GSE16538 | U133Plus2 | 12 | Lung |
| GSE17639 | U133Plus2 | 12 | Reticulocytes |
| GSE18781 | U133Plus2 | 55 | Peripheral blood |
| GSE22688 | U133A | 38 | Blood outgrowth endothelial cells |
| GSE20504 | U133Plus2 | 10 | Umbilical cord blood-derived Endothelial colony forming cells |