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. 2012 Aug 31;3:165. doi: 10.3389/fgene.2012.00165

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Copyright © 2012 Kelley.

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in other forums, provided the original authors and source are credited and subject to any copyright notices concerning any third-party graphics etc.

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Selective sweep with recombination. Cartoon of seven chromosomal regions with neutral, segregating alleles (striped dots); the black segments are the chromosomal segments carrying the selected allele (white dot). (A) The region surrounding the incomplete selective sweep harbors a mix of long haplotypes carrying the selected allele (black segments) and ancestral haplotypes (white segments). There are also low frequency ancestral alleles (triangle) and new mutations (star) in the region. (B) Inferred haplotype lengths (blue) by the haplotype-based method applied to ascertained SNP data. (C) Inferred haplotype lengths (blue) by the haplotype-based method applied to full-resequencing data.