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. Author manuscript; available in PMC: 2012 Nov 1.
Published in final edited form as: Mod Pathol. 2012 Jan 27;25(5):709–721. doi: 10.1038/modpathol.2011.205

Table 2. Raw Protein Spectral Counts for Individual Patients and Controls.

Controls Fibronectin
1 2 3 1 2 Protein Identification
16 20 34 287 410 IPI:IPI00022418.1|FN1 Isoform 1 of Fibronectin
16 20 34 287 409 IPI:IPI00339223.1|FN1 Isoform 3 of Fibronectin
16 20 32 285 410 IPI:IPI00339228.1|FN1 Isoform 8 of Fibronectin
16 20 32 285 409 IPI:IPI00855777.1|FN1 Isoform 14 of Fibronectin
1 0 0 24 31 IPI:IPI00296534.2|FBLN1 Isoform D of Fibulin-1
0 0 0 18 19 IPI:IPI00889740.1|FBLN1 Fibulin 1
0 0 0 7 5 IPI:IPI00294615.3|FBLN5 Fibulin-5
48 51 61 33 19 IPI:IPI00783665.4|LAMA5 Laminin subunit alpha-5
30 21 37 58 66 IPI:IPI00024284.5|HSPG2 Basement membrane-specific heparan sulfate proteoglycan core protein
0 0 0 4 5 IPI:IPI00022394.2|C1QC Complement C1q subcomponent subunit C
4 4 12 30 34 IPI:IPI00783987.2|C3 Complement C3 (Fragment)
0 6 4 15 15 IPI:IPI00892604.1|C4B;C4A Complement component C4B (Childo blood group) 2
0 0 0 7 1 IPI:IPI00816741.1|C5 Complement component 5 variant (Fragment)
0 0 0 4 2 IPI:IPI00011261.2|C8G Complement component C8 gamma chain
5 5 5 14 9 IPI:IPI00022395.1|C9 Complement component C9
0 0 0 5 2 IPI:IPI00029739.5|CFH Isoform 1 of Complement factor H
0 0 0 7 2 IPI:IPI00021842.1|APOE Apolipoprotein E
0 5 0 15 5 IPI:IPI00022391.1|APCS Serum amyloid P-component
0 0 0 3 6 IPI:IPI00022432.1|TTR Transthyretin
0 2 0 18 20 IPI:IPI00029717.1|FGA Isoform 2 of Fibrinogen alpha chain
0 0 0 10 19 IPI:IPI00298497.3|FGB Fibrinogen beta chain
8 10 5 0 0 IPI:IPI00014594.1|NPHS2 Isoform 1 of Podocin
34 20 28 7 0 IPI:IPI00027258.3|SYNPO Isoform 2 of Synaptopodin
97 80 97 71 60 IPI:IPI00013808.1|TACTN4 Alpha-actinin-4
7 0 2 0 0 IPI:IPI00787286.1|CR1 Complement component (3b/4b) receptor 1
35 20 27 7 3 IPI:IPI00247063.3|MME Neprilysin
24 20 18 9 2 IPI:IPI00335824.5|TJP1 Isoform Short of Tight junction protein ZO-1
187 183 244 172 116 IPI:IPI00019502.3|MYH9 Isoform 1 of Myosin-9
6 3 5 2 0 IPI:IPI00024915.2|PRDX5 Isoform Mitochondrial of Peroxiredoxin-5; mitochondrial
8 4 7 1 0 IPI:IPI00220301.5|PRDX6 Peroxiredoxin-6
6 0 6 0 0 IPI:IPI00657682.2|GSTA1 Glutathione S-transferase A1
7 0 6 0 0 IPI:IPI00745233.2|GSTA2 Glutathione S-transferase A2