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. Author manuscript; available in PMC: 2012 Sep 11.
Published in final edited form as: Nat Methods. 2011 Sep 11;8(10):821–827. doi: 10.1038/nmeth.1699

Figure 3. Kinase substrate analysis.

Figure 3

Adapted from Manning et al.24. We predicted potential kinases for every phosphorylation site using the Group-based Prediction system. We applied Fisher’s exact test (followed by Benjamini-Hochberg adjustment) to test for enrichment of kinase substrates in sets of phosphorylation sites that were changing by more than two-fold between ES and NFF cells kinase substrates enriched in ES cells are highlighted in red (P < 0.05). Kinase substrates enriched in ES cells are highlighted in blue (P < 0.05).