Table 1.
Public ncRNA databases
| Website (reference) | Name | Species | MicroRNA | Small nucleolar RNA | Infrastructural RNA (ribosomal RNA, transfer RNA, small nuclear RNA) | Notes |
|---|---|---|---|---|---|---|
| http://biobases.ibch.poznan.pl/ncRNA/ | Multiple kingdoms | Excluded | Excluded | Excluded | ||
| http://www.noncode.org/ 20 | Noncode | Multiple kingdoms | Included | Included | Small nuclear RNA excluded | Experiment-based, ncRNAs divided on the basis of function (pf classes) and disease association |
| http://research.imb.uq.edu.au/rnadb/ 21 | Rnadb | Multiple kingdoms | Included | Included | Excluded | |
| http://www.ncrna.org/ 22 | fRNA | Multiple kingdoms | Included | Functional ncRNA catalog, microarray info about ncRNA, dedicated UCSC page | ||
| http://escience.invitrogen.com/ncRNA/ | Human, mouse | Excluded | Excluded | Excluded | ||
| http://rnaqueen.sysu.edu.cn/ncRNAimprint/ 23 | ncRNA imprint | Mammals | Included | Included | Excluded | Focused only on imprinting ncRNAs |
| http://jsm-research.imb.uq.edu.au/nred/cgi-bin/ncrnadb.pl 24 | NRED | Human, mouse | Excluded | Excluded | Expression data | |
| http://www.lncrnadb.org/ 25 | lncRNAdb | Multiple kingdoms | Excluded | Excluded | Excluded | |
| http://rfam.sanger.ac.uk/ 26 | Rfam | Multiple kingdoms | Included | Included |
Abbreviations: fRNA, functional RNA; lncRNA, long non-coding RNA; ncRNA, non-protein-coding RNA; UCSC, University of California Santa Cruz. The website, reference and content are listed for each database, along with the most interesting feature of each website.