Table 4.
Backbone refinement of the modeled PA proteases fromPlasmodium falciparum,Pyrococcus furiosus, Neurospora crassaandArabidopsis thaliana
|
Structural model |
φ-ψ distribution in the regions of Ramachandran’s plot |
|||
|---|---|---|---|---|
| Number of residues (percentage) | ||||
| |
Most favoured |
Additional allowed |
Generously allowed |
Disallowed |
|
P. falciparum |
|
|
|
|
| Before backbone refinement |
89(76.1%) |
21(17.9%) |
4(3.4%) |
3(2.6%) |
| After backbone refinement |
84(71.9%) |
33(28.2%) |
0 (0.0%) |
0 (0.0%) |
|
P. furiosus |
|
|
|
|
| Before backbone refinement |
62(56.9%) |
40(36.7%) |
1(0.9%) |
6(5.5%) |
| After backbone refinement |
84(71.8%) |
33(28.2%) |
0 (0.0%) |
0 (0.0%) |
|
N. crassa |
|
|
|
|
| Before backbone refinement |
65(52.0%) |
50(40.4%) |
4(3.4%) |
3(2.6%) |
| After backbone refinement |
69(55.5%) |
56(44.8%) |
0 (0.0%) |
0 (0.0%) |
|
A. thaliana |
|
|
|
|
| Before backbone refinement |
82(60.7%) |
45(32.6%) |
7(4.4%) |
3(2.2%) |
| After backbone refinement | 86(63.7%) | 49(36.3%) | 0 (0.0%) | 0 (0.0%) |