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. Author manuscript; available in PMC: 2013 Sep 5.
Published in final edited form as: J Am Chem Soc. 2012 Aug 21;134(35):14580–14594. doi: 10.1021/ja3058474

Table 3.

Apparent pKa of the Essential Residue at Free ScOMPDC and at the Enzyme Liganded by OMP, UMP and F-UMP in D2O at 25 °C and I = 0.1 (NaCl).

Ligand pKEa pKESb
OMPc 8.3 9.4
UMP 8.5 ± 0.2d 8.0 ± 0.1e
F-UMP 8.5 ± 0.2d 7.1 ± 0.1f
a

pKa of the essential group at the free enzyme (Scheme 6).

b

pKa of the essential group at the E•S complex (Scheme 6).

c

Determined from the pH-rate profiles of kcat/Km (for pKE) and kcat (for pKES) for decarboxylation of OMP in H2O [Ref. 2]. The pKas in D2O were estimated from the values in H2O and the 0.6 unit higher pKas of ammonium ions in D2O than in H2O [Ref. 38].

d

Determined from the pD-rate profile for kex/Kd for deuterium exchange into F-UMP (Figure 4).

e

Determined from the pD-rate profile for kex for deuterium exchange into UMP (Figure 5B).

f

Determined from the pD-rate profile for kex for deuterium exchange into F-UMP (Figure 5A).