Table 1. Top 30 genes with promoters differentially methylated in control and miR122-silenced Huh7 cells. Values indicate methylation levels. Values in ‘Differences' indicate quantitative differences in methylation levels of target gene CpG sites. Higher values indicate greater methylation levels. Genes in bold and highlighted in gray means greater methylation; others were less methylated in miR122-silenced Huh7 cells.

SYMBOL	Control	miR122-silenced	Difference	CpG ISLAND LOCATIONS
GPC3	0.4242135	0.11596	0.3082535	X:132946499-132947763
FLJ30058	0.4155016	0.1428133	0.2726883	X:130019792-130020537
EIF3S6IP	0.672594	0.4012034	0.2713906	22:36574299-36576077
BHLHB9	0.3481071	0.07687688	0.27123022	X:101862184-101862707
PORCN	0.6389685	0.3697215	0.269247
MSI2	0.4593301	0.1955636	0.2637665	17:52688030-52689554
DNTT	0.6114385	0.3489618	0.2624767	10:98054238-98054478
SEMA3B	0.3901392	0.1301293	0.2600099	3:50285369-50286362
RYR2	0.4331115	0.1756537	0.2574578	1:235271651-235273428
TCEAL7	0.6519198	0.4006093	0.2513105
NR0B2	0.3711949	0.1234481	0.2477468
SOCS3	0.1831344	0.4273662	0.2442318	17:73866027-73868731
TAS2R16	0.5821649	0.3380581	0.2441068
BHLHB9	0.3021148	0.06171004	0.24040476	X:101862184-101862707
OR12D3	0.5266486	0.2884241	0.2382245
ADAMTSL1	0.4537211	0.2196532	0.2340679
TBX6	0.5031447	0.2695281	0.2336166	16:30010427-30011656
ICAM4	0.4990334	0.2668367	0.2321967	19:10258558-10259935
C9orf125	0.2387415	0.4707038	0.2319623	9:103287963-103289481
ELN	0.1332373	0.3629701	0.2297328	7:73080116-73080605
ANKRD30A	0.898423	0.6711555	0.2272675	10:37453955-37454965
OR10J1	0.5324367	0.3094136	0.2230231
TP73	0.3596564	0.1386476	0.2210088	1:3596889-3597535
CNNM1	0.6313883	0.4106784	0.2207099	10:101078809-101080801
DHH	0.2955738	0.07619943	0.21937437	12:47774151-47774653
CTAG2	0.5303309	0.3110451	0.2192858	X:153536438-153536702
GNB4	0.3091451	0.09039365	0.21875145	3:180651316-180652496
PNPLA2	0.4458646	0.2272328	0.2186318	11:808884-809164
FGF7	0.6298472	0.4128944	0.2169528
NTE	0.4557684	0.2400911	0.2156773	19:7504300-7507429