Table 1. Oligonucleotides primer sequences for PCR and probe preparations.
Targeted genomic Island | Sequence (5′–3′) | Amplicon (bp) | Annealing temperature | |
G1 | F | GCACTCAAAGGGGCTAAAG | 1046 | 55°C |
R | GAAGATAATACGGCGGAATACAAT | |||
G2 | F | TCTAAATTCATCGGAGTA | 570 | 48°C |
R | TTTTGAGGGTTATATGAATGTC | |||
G6 | F | GTAAAAGCGTGCGTGATGGTATGG | 1334 | 63°C |
R | CGCTGTTTGTGCCGTTGCTAAG | |||
G8 | F | ATTGGGTTATATTTTTCTGTC | 814 | 50°C |
R | AATCCCTTTGCTACCATCA | |||
G9 | F | TAACTTCAACAATAGGTCGTCCAG | 444 | 52°C |
R | TATCTTCTATTTTAACATCTAC | |||
G10 | F | ACGCGCTTTAATTGTTTGGTAGA | 1603 | 58°C |
R | TTTTTGGGTGATATTGTGCTTTAG | |||
G11 | F | CAAAGATTATGGCTACCTA | 616 | 50°C |
R | GTTATATTTTCTTACACTCTCC |
Note: Product sizes are based on 6P18H1 genome. F – forward primer; R – reverse primer.