Table 1.
DENV-1 and DENV-4 strains used in this study*
| Strain | Place of collection | Year of collection | Genotype | GenBank accession no. |
|---|---|---|---|---|
| DENV-1 | ||||
| US-HI/Hawaii/1944 | Hawaii, USA | 1944 | I | AB609588 |
| MY/36000/2005 | Malaysia | 2005 | I | FR666924 |
| TH/TH-Sman/1954 | Thailand | 1954 | II | D10513 |
| TH/2543-63/1963 | Thailand | 1963 | II | AF425629 |
| MY/P72-1244/1972 | Malaysia | 1972 | III | AF231721 |
| MY/36046/2005 | Malaysia | 2005 | III | FN825674 |
| US-HI/HawM2540/2001 | Hawaii, USA | 2001 | IV | DQ672562 |
| US-HI/HawO3663/2001 | Hawaii, USA | 2001 | IV | DQ672564 |
| VG/BID-V2937/1985 | British Virgin Islands | 1985 | V | GQ868601 |
| HT/DB067/2010 | Haiti | 2010 | V | JF969282 |
| US-FL/KW10AG/2010 | Key West, FL, USA | 2010 | V | JF519855 |
| US-FL/FDA-ARC-39-10/2010† | Key West, FL, USA | 2010 | V | JQ045564 |
| MQ/481013035/2008 | Martinique | 2008 | V | JN022599 |
| MX/BID-V3739/2007 | Mexico | 2007 | V | GQ868527 |
| MX/BID-V3679/2007 | Mexico | 2007 | V | GU131966 |
| MX/BID-V3758/2008 | Mexico | 2008 | V | GQ868537 |
| NI/BID-V653/2004 | Nicaragua | 2004 | V | EU596501 |
| NI/BID-V2343/2006 | Nicaragua | 2006 | V | FJ562104 |
| NI/BID-V746/2006 | Nicaragua | 2006 | V | JN819403 |
| NI/BID-V2646/2008 | Nicaragua | 2008 | V | GQ199858 |
| NI/BID-V2652/2008 | Nicaragua | 2008 | V | GQ199859 |
| NI/BID-V5504/2009 | Nicaragua | 2009 | V | JF937635 |
| NI/BID-V5067/2009 | Nicaragua | 2009 | V | JF937644 |
| US-PR/BID-V2136/1992 | Puerto Rico | 1992 | V | FJ410186 |
| US-PR/BID-V2135/1992 | Puerto Rico | 1992 | V | FJ547087 |
| US-PR/BID-V2133/1993 | Puerto Rico | 1993 | V | FJ410184 |
| US-PR/BID-V2134/1993 | Puerto Rico | 1993 | V | FJ410185 |
| US-PR/BID-V1743/1995 | Puerto Rico | 1995 | V | FJ205874 |
| US-PR/BID-V1744/1995 | Puerto Rico | 1995 | V | FJ205875 |
| US-PR/BID-V2139/1996 | Puerto Rico | 1996 | V | FJ410188 |
| US-PR/BID-V1739/1998 | Puerto Rico | 1998 | V | FJ205872 |
| US-PR/BID-V852/2006 | Puerto Rico | 2006 | V | EU482591 |
| US-PR/FDA-ARC-12-10/2010† | Puerto Rico | 2010 | V | JQ045561 |
| US-PR/FDA-ARC-30-10/2010† | Puerto Rico | 2010 | V | JQ045562 |
| US-PR/FDA-ARC-31-10/2010† | Puerto Rico | 2010 | V | JQ045563 |
| VE/BID-V2423/2004 | Venezuela | 2004 | V | JN819425 |
| DENV-4 | ||||
| PH/H241-P/1956 | Philippines | 1956 | I | FJ439174 |
| JP/D4-61NIID/1961 | Japan | 1961 | I | AB111090 |
| SL/No17/1978 | Sri Lanka | 1978 | I | AY550909 |
| CR/D4.108/1996 | Costa Rica | 1996 | II | AY152104 |
| DM/814669/1983 | Dominica | 1981 | II | AF326573 |
| DR/DB040/1997 | Dominican Republic | 1997 | II | JF804053 |
| SV/D4.110/1993 | El Salvador | 1993 | II | AY152300 |
| MQ/D4.112/1995 | Martinique | 1995 | II | AY152100 |
| MX/D4.111/1995 | Mexico | 1995 | II | AY152304 |
| US-PR/D4M.25/1982 | Puerto Rico | 1982 | II | AY152296 |
| US-PR/D4M.9/1982 | Puerto Rico | 1982 | II | AY152324 |
| US-PR/D4.115/1986 | Puerto Rico | 1986 | II | AY152224 |
| US-PR/D4.116/1986 | Puerto Rico | 1986 | II | AY152272 |
| US-PR/D4.3/1987 | Puerto Rico | 1987 | II | AY152108 |
| US-PR/D4.67/1987 | Puerto Rico | 1987 | II | AY152236 |
| US-PR/D4.85/1994 | Puerto Rico | 1994 | II | AY152096 |
| US-PR/D4.86/1994 | Puerto Rico | 1994 | II | AY152116 |
| US-PR/D4.88/1994 | Puerto Rico | 1994 | II | AY152288 |
| US-PR/BID-V2435/1996 | Puerto Rico | 1996 | II | GQ199881 |
| US-PR/D4.19/1998 | Puerto Rico | 1998 | II | AY152040 |
| US-PR/D4.44/1998 | Puerto Rico | 1998 | II | AY152088 |
| US-PR/BID-V1093/1998 | Puerto Rico | 1998 | II | EU854296 |
| US-PR/BID-V1082/1998 | Puerto Rico | 1998 | II | FJ024424 |
| US-PR/BID-V2443/1998 | Puerto Rico | 1998 | II | FJ850059 |
| US-PR/FDA-ARC-19-10/2010† | Puerto Rico | 2010 | II | JQ045565 |
| US-PR/FDA-ARC-42-10/2010† | Puerto Rico | 2010 | II | JQ045566 |
| US-VG/SC/DB045/1994 | U.S. Virgin Islands | 1994 | II | JF804058 |
| TH/ThD4 0439 01/2001 | Thailand | 2001 | III | AY618940 |
| TH/ThD4 0164 99/1999 | Thailand | 1999 | III | AY618986 |
| MY/P75-514/1975 | Malaysia | 1975 | Sylvatic | AF231723 |