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Acta Crystallographica Section E: Structure Reports Online logoLink to Acta Crystallographica Section E: Structure Reports Online
. 2012 Aug 25;68(Pt 9):o2784. doi: 10.1107/S1600536812036045

5-Amino-3-anilino-1H-pyrazole-4-carbonitrile

Shaaban K Mohamed a, Mehmet Akkurt b,*, Frank R Fronczek c, Mahmoud A A El-Remaily d, Antar A Abdelhamid a
PMCID: PMC3435815  PMID: 22969661

Abstract

In the title compound, C10H9N5, the phenyl ring is twisted with respect to the pyrazole ring, forming a dihedral angle of 24.00 (6)°. In the crystal, mol­ecules are linked by N—H⋯N hydrogen bonds into chains running parallel to [010] containing alternating R 2 2(6) and R 2 2(12) rings. Further inter­actions are found in the crystal, viz. N—H⋯π(phen­yl) inter­actions and weak face-to-face π–π stacking inter­actions [centroid–centroid distance = 3.8890 (6) Å] between the centroids of the pyrazole and phenyl rings are observed.

Related literature  

For biological activities of pyrazoles, see: Kaushik et al. (2010 ▶); Sheikh et al. (2009 ▶); Krishnamurthy et al. (2004 ▶); Grimmett (1970 ▶). For the use of related compounds as bridging ligands, see: Lynch & McClenaghan (2005 ▶). For the synthesis of the title compound, see: Soliman et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).graphic file with name e-68-o2784-scheme1.jpg

Experimental  

Crystal data  

  • C10H9N5

  • M r = 199.22

  • Orthorhombic, Inline graphic

  • a = 6.3441 (1) Å

  • b = 11.1354 (2) Å

  • c = 13.7754 (3) Å

  • V = 973.15 (3) Å3

  • Z = 4

  • Mo Kα radiation

  • μ = 0.09 mm−1

  • T = 90 K

  • 0.25 × 0.17 × 0.08 mm

Data collection  

  • Bruker Kappa APEXII DUO diffractometer

  • Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.978, T max = 0.993

  • 32878 measured reflections

  • 2975 independent reflections

  • 2767 reflections with I > 2σ(I)

  • R int = 0.035

  • Standard reflections: 0

Refinement  

  • R[F 2 > 2σ(F 2)] = 0.033

  • wR(F 2) = 0.086

  • S = 1.09

  • 2975 reflections

  • 152 parameters

  • 4 restraints

  • H atoms treated by a mixture of independent and constrained refinement

  • Δρmax = 0.32 e Å−3

  • Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON.

Supplementary Material

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812036045/tk5143sup1.cif

e-68-o2784-sup1.cif (19.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036045/tk5143Isup2.hkl

e-68-o2784-Isup2.hkl (146KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812036045/tk5143Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report

Table 1. Hydrogen-bond geometry (Å, °).

Cg2 is the centroid of the C1–C6 phenyl ring.

D—H⋯A D—H H⋯A D⋯A D—H⋯A
N1—H1N⋯N5i 0.84 (2) 2.15 (2) 2.9934 (13) 179 (2)
N3—H3N⋯N2ii 0.87 (2) 2.09 (2) 2.8947 (13) 154 (2)
N4—H12⋯Cg2iii 0.85 (2) 2.51 (2) 3.2011 (12) 140 (2)

Symmetry codes: (i) Inline graphic; (ii) Inline graphic; (iii) Inline graphic.

Acknowledgments

We thank Sohag University for financial support of this project. Manchester Metropolitan University, Erciyes University and Louisiana State University are gratefully acknowledged for supporting this study.

supplementary crystallographic information

Comment

The interest in pyrazole compounds stems from their pharmaceutical and agricultural applications such as drugs, dyes and anaesthetics (Grimmett, 1970; Sheikh et al., 2009; Kaushik et al., 2010; Krishnamurthy et al., 2004). In addition, such pyrazoles and related compounds are common molecules used in coordination or organometallic chemistry as bridging ligands, utilizing the ring positions of the two N atoms (Lynch & McClenaghan, 2005). We report herein the crystal structure of the title compound which was synthesized by our team as a precursor having two functional substituents (amino and nitrile groups) for the purposes of synthesis of multi-fused pyrazolo-heterocyclic compounds such as nitrogen bridgehead derivatives having potential biological activities (Soliman et al., 2010).

In the molecule of the title compound, (Fig. 1), the phenyl and 1H-pyrazole ring makes a dihedral angle of 24.00 (6)° with each other.

The crystal structure is stabilized by N—H···N hydrogen bonds (Table 1, Fig. 2) which link the molecules into chains running parallel to [010] with alternating R22(6) and R22(12) motifs (Bernstein et al., 1995). In addition, the crystal structure exhibits N—H···π(phenyl) interactions, Table 1, and weak face-to-face π—π stacking interactions [Cg1···Cg2 (1 + x, y, z) = 3.8890 (6) Å; where Cg1 and Cg2 are the centroid of the (N2/N3/C7–C9) 1H-pyrazole and (C1–C6) phenyl rings].

Experimental

The title compound was prepared according to the literature procedure (Soliman et al., 2010). Crystals were obtained from an ethanol solution of (I) by slow evaporation (M.pt: 481 K).

Refinement

The hydrogen atoms bound to nitrogen were located from a difference Fourier map and were refined with a distance restraint of N—H = 0.86 (2) Å; their Uiso values were refined freely. The hydrogen atoms bound to carbon were positioned geometrically and refined using a riding model with C—H = 0.93 Å, and with Uiso = 1.2Ueq(C). The absolute structure could not be determined reliably; Friedel pairs were not merged.

Figures

Fig. 1.

Fig. 1.

The molecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level.

Fig. 2.

Fig. 2.

View of chains of the dimers formed by pairs of N—H···N hydrogen bonds, with the R22(12) and R22(6) motifs connected into a supramolecular chain. H atoms not involved in hydrogen bonds have been omitted for clarity.

Crystal data

C10H9N5 F(000) = 416
Mr = 199.22 Dx = 1.360 Mg m−3
Orthorhombic, P212121 Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2ab Cell parameters from 9908 reflections
a = 6.3441 (1) Å θ = 2.4–30.5°
b = 11.1354 (2) Å µ = 0.09 mm−1
c = 13.7754 (3) Å T = 90 K
V = 973.15 (3) Å3 Plate, colourless
Z = 4 0.25 × 0.17 × 0.08 mm

Data collection

Bruker Kappa APEXII DUO diffractometer 2975 independent reflections
Radiation source: fine-focus sealed tube 2767 reflections with I > 2σ(I)
TRIUMPH curved graphite monochromator Rint = 0.035
φ and ω scans θmax = 30.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004) h = −9→9
Tmin = 0.978, Tmax = 0.993 k = −15→15
32878 measured reflections l = −19→19

Refinement

Refinement on F2 Secondary atom site location: difference Fourier map
Least-squares matrix: full Hydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.033 H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.086 w = 1/[σ2(Fo2) + (0.0494P)2 + 0.1533P] where P = (Fo2 + 2Fc2)/3
S = 1.09 (Δ/σ)max = 0.001
2975 reflections Δρmax = 0.32 e Å−3
152 parameters Δρmin = −0.20 e Å−3
4 restraints Absolute structure: nd
Primary atom site location: structure-invariant direct methods

Special details

Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)

x y z Uiso*/Ueq
N1 0.50345 (15) −0.01004 (8) 0.89839 (7) 0.0142 (2)
N2 0.71282 (15) 0.15769 (8) 0.94613 (7) 0.0154 (2)
N3 0.89266 (15) 0.16812 (8) 1.00299 (7) 0.0168 (2)
N4 1.13973 (17) 0.05235 (10) 1.09010 (8) 0.0234 (3)
N5 0.84875 (15) −0.24944 (9) 1.03572 (7) 0.0204 (3)
C1 0.40580 (18) 0.15607 (10) 0.78868 (8) 0.0173 (3)
C2 0.2548 (2) 0.20761 (11) 0.72811 (8) 0.0205 (3)
C3 0.06057 (19) 0.15345 (11) 0.71341 (8) 0.0213 (3)
C4 0.01783 (19) 0.04497 (11) 0.75945 (8) 0.0193 (3)
C5 0.16597 (18) −0.00746 (10) 0.82040 (7) 0.0152 (3)
C6 0.36064 (16) 0.04854 (9) 0.83683 (7) 0.0130 (2)
C7 0.66942 (16) 0.04110 (9) 0.94711 (7) 0.0122 (2)
C8 0.81769 (17) −0.02408 (9) 1.00460 (8) 0.0133 (2)
C9 0.96026 (17) 0.06332 (10) 1.03764 (8) 0.0153 (3)
C10 0.83277 (17) −0.14847 (9) 1.02122 (7) 0.0145 (2)
H1 0.53600 0.19300 0.79700 0.0210*
H1N 0.459 (3) −0.0771 (13) 0.9176 (12) 0.027 (4)*
H2 0.28480 0.27970 0.69700 0.0250*
H3 −0.03960 0.18910 0.67340 0.0260*
H3N 0.958 (3) 0.2358 (13) 1.0116 (14) 0.034 (5)*
H4 −0.11110 0.00720 0.74930 0.0230*
H5 0.13580 −0.08020 0.85050 0.0180*
H11 1.200 (3) 0.1170 (14) 1.1129 (13) 0.038 (5)*
H12 1.165 (3) −0.0151 (14) 1.1162 (13) 0.036 (5)*

Atomic displacement parameters (Å2)

U11 U22 U33 U12 U13 U23
N1 0.0145 (4) 0.0093 (4) 0.0189 (4) −0.0012 (3) −0.0034 (4) 0.0031 (3)
N2 0.0152 (4) 0.0112 (4) 0.0197 (4) −0.0003 (3) −0.0030 (3) −0.0012 (3)
N3 0.0178 (4) 0.0117 (4) 0.0208 (4) −0.0023 (3) −0.0038 (3) −0.0005 (3)
N4 0.0219 (5) 0.0230 (5) 0.0253 (5) −0.0035 (4) −0.0095 (4) 0.0041 (4)
N5 0.0189 (5) 0.0160 (4) 0.0262 (5) 0.0023 (4) 0.0001 (4) 0.0038 (4)
C1 0.0189 (5) 0.0150 (5) 0.0179 (5) −0.0012 (4) −0.0018 (4) 0.0018 (4)
C2 0.0260 (6) 0.0172 (5) 0.0183 (5) 0.0030 (4) −0.0029 (4) 0.0044 (4)
C3 0.0206 (5) 0.0250 (6) 0.0182 (5) 0.0068 (5) −0.0037 (4) 0.0018 (4)
C4 0.0144 (5) 0.0251 (5) 0.0184 (5) 0.0007 (4) −0.0004 (4) −0.0010 (4)
C5 0.0134 (5) 0.0170 (4) 0.0153 (4) −0.0011 (4) 0.0010 (4) 0.0006 (4)
C6 0.0136 (4) 0.0126 (4) 0.0129 (4) 0.0025 (4) −0.0004 (3) −0.0002 (3)
C7 0.0124 (4) 0.0105 (4) 0.0137 (4) 0.0007 (4) 0.0005 (4) 0.0003 (3)
C8 0.0128 (4) 0.0126 (4) 0.0145 (4) 0.0008 (3) 0.0001 (4) 0.0011 (3)
C9 0.0157 (4) 0.0155 (5) 0.0147 (4) −0.0005 (4) 0.0002 (3) 0.0004 (4)
C10 0.0125 (4) 0.0164 (4) 0.0147 (4) 0.0011 (4) 0.0008 (3) 0.0017 (3)

Geometric parameters (Å, º)

N1—C6 1.4020 (14) C2—C3 1.3868 (17)
N1—C7 1.3724 (14) C3—C4 1.3910 (17)
N2—N3 1.3888 (14) C4—C5 1.3889 (16)
N2—C7 1.3272 (13) C5—C6 1.4019 (15)
N3—C9 1.3318 (14) C7—C8 1.4279 (15)
N4—C9 1.3541 (15) C8—C9 1.4044 (15)
N5—C10 1.1464 (14) C8—C10 1.4072 (14)
N1—H1N 0.841 (15) C1—H1 0.9300
N3—H3N 0.868 (16) C2—H2 0.9300
N4—H11 0.874 (17) C3—H3 0.9300
N4—H12 0.848 (16) C4—H4 0.9300
C1—C2 1.3940 (16) C5—H5 0.9300
C1—C6 1.3985 (15)
C6—N1—C7 126.77 (9) N1—C7—N2 124.06 (9)
N3—N2—C7 104.27 (8) N1—C7—C8 124.46 (9)
N2—N3—C9 113.17 (9) C7—C8—C9 104.58 (9)
C6—N1—H1N 112.8 (13) C7—C8—C10 129.45 (10)
C7—N1—H1N 118.2 (12) C9—C8—C10 125.85 (10)
N2—N3—H3N 122.8 (12) N3—C9—N4 122.76 (10)
C9—N3—H3N 123.9 (12) N3—C9—C8 106.48 (9)
C9—N4—H12 117.7 (12) N4—C9—C8 130.69 (11)
H11—N4—H12 119.7 (17) N5—C10—C8 178.64 (11)
C9—N4—H11 119.1 (12) C2—C1—H1 120.00
C2—C1—C6 119.71 (10) C6—C1—H1 120.00
C1—C2—C3 121.26 (11) C1—C2—H2 119.00
C2—C3—C4 118.97 (11) C3—C2—H2 119.00
C3—C4—C5 120.58 (11) C2—C3—H3 121.00
C4—C5—C6 120.45 (10) C4—C3—H3 121.00
N1—C6—C1 123.57 (9) C3—C4—H4 120.00
N1—C6—C5 117.39 (9) C5—C4—H4 120.00
C1—C6—C5 119.00 (9) C4—C5—H5 120.00
N2—C7—C8 111.48 (9) C6—C5—H5 120.00
C7—N1—C6—C5 −159.01 (10) C2—C3—C4—C5 0.99 (17)
C6—N1—C7—N2 3.39 (17) C3—C4—C5—C6 0.32 (16)
C7—N1—C6—C1 23.65 (16) C4—C5—C6—C1 −1.90 (15)
C6—N1—C7—C8 −176.20 (10) C4—C5—C6—N1 −179.36 (10)
C7—N2—N3—C9 0.38 (12) N1—C7—C8—C9 178.44 (10)
N3—N2—C7—C8 0.53 (12) N2—C7—C8—C10 −177.26 (11)
N3—N2—C7—N1 −179.10 (10) N1—C7—C8—C10 2.37 (18)
N2—N3—C9—N4 176.12 (10) N2—C7—C8—C9 −1.19 (12)
N2—N3—C9—C8 −1.13 (13) C7—C8—C9—N3 1.35 (12)
C6—C1—C2—C3 −0.88 (17) C10—C8—C9—N4 0.7 (2)
C2—C1—C6—N1 179.46 (10) C7—C8—C9—N4 −175.60 (12)
C2—C1—C6—C5 2.16 (16) C10—C8—C9—N3 177.60 (10)
C1—C2—C3—C4 −0.71 (17)

Hydrogen-bond geometry (Å, º)

Cg2 is the centroid of the C1–C6 phenyl ring.

D—H···A D—H H···A D···A D—H···A
N1—H1N···N5i 0.84 (2) 2.15 (2) 2.9934 (13) 179 (2)
N3—H3N···N2ii 0.87 (2) 2.09 (2) 2.8947 (13) 154 (2)
C1—H1···N2 0.93 2.37 2.9152 (15) 117
N4—H12···Cg2iii 0.85 (2) 2.51 (2) 3.2011 (12) 140 (2)

Symmetry codes: (i) x−1/2, −y−1/2, −z+2; (ii) x+1/2, −y+1/2, −z+2; (iii) −x+3/2, −y, z+1/2.

Footnotes

Supplementary data and figures for this paper are available from the IUCr electronic archives (Reference: TK5143).

References

  1. Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119.
  2. Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573.
  3. Bruker (2007). APEX2 and SAINT Bruker AXS Inc., Madison, Wisconsin, USA.
  4. Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565.
  5. Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838.
  6. Grimmett, M. R. (1970). Adv. Heterocycl. Chem. 12, 103–183.
  7. Kaushik, D., Khan, S. A., Chawla, G. & Kumar, S. (2010). Eur. J. Med. Chem. 45, 3943–3949. [DOI] [PubMed]
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Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812036045/tk5143sup1.cif

e-68-o2784-sup1.cif (19.7KB, cif)

Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812036045/tk5143Isup2.hkl

e-68-o2784-Isup2.hkl (146KB, hkl)

Supplementary material file. DOI: 10.1107/S1600536812036045/tk5143Isup3.cml

Additional supplementary materials: crystallographic information; 3D view; checkCIF report


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