Table 2.
Pathway & interactome databases used to identify edges between genes
| Database | Version/date | Type | Edges | Graph type |
|---|---|---|---|---|
|
i2D |
1.7.1 |
PPIN |
11,327 |
Undirected |
|
STRING |
8.2.1 |
Text mining |
35,033 |
Mixture |
|
GeneGo |
01.2010 |
Curated |
11,994 |
Mixture |
|
Cell Map |
01.2010 |
Curated |
12,933 |
Mixture |
|
NCI-PID |
01.2010 |
Curated |
14,58 |
Mixture |
|
Reactome |
v35 |
Curated |
6,930 |
Mixture |
|
Macrophage curated |
2010 |
Curated |
504 |
Mixture |
| SUMMARY | 64,276 | Mixture |
PPIN - protein-protein interaction network derived largely from high-throughput experiments; Mixture – both directed & signed, and undirected edges.