Table 1.
The list of species contained in the mock dataset and corresponding species used as references in GeneStitch
| Species in mock dataset | Reference speciesa |
|---|---|
| NC_002662 Lactococcus lactis subsp. lactis Il1403 | NC_012984 Lactobacillus plantarum JDM1 (genus) |
| NC_008527 L. lactis subsp. cremoris SK11 | NC_014724 Lactobacillus amylovorus GRL 1112 (order) |
| NC_008525 Pediococcus pentosaceus ATCC 25745 | NC_008529 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 (family) |
| NC_010999 Lactobacillus casei BL23 | NC_014106 Lactobacillus crispatus ST1 (genus) |
| NC_008497 Lactobacillus brevis ATCC 367 | NC_009513 Lactobacillus reuteri DSM 20016 (genus) |
| NC_008700 Shewanella amazonensis SB2B | NC_014012 Shewanella violacea DSS12 (genus) |
| NC_008095 Myxococcus xanthus DK 1622 | NC_011891 Anaeromyxobacter dehalogenans 2CP-1 (family) |
| NC_008578 Acidothermus cellulolyticus 11B | NC_014666 Frankia sp. EuI1c (order) |
| NC_002607 Halobacterium sp. NRC-1 | NC_013967 Haloferax volcanii DS2 (family) |
aThe taxonomic ranks in the parentheses indicate the lowest common taxonomy level shared between the reference species and the species in the mock dataset.