Table 3.

Average AUC values per query in genome benchmark

Score for sorting	KSEARCH				SANS		BLAST
	k = 5	k = 6	k = 7	k = 8	w = 1000	w = 2000
Native	0.51	0.55	0.49	0.44	0.56	0.54
Alignment	0.52	0.56	0.49	0.44	0.60	0.62	0.95