Table 2.
Summary of Benchmarking Results
| |
Peptide |
Product ion |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| |
Probability |
Peptide score |
Rank |
Probability |
Rank |
|||||||||
| >0.5 | >0.9 | 0.95 | >20 | >30 | >40 | >50 | Top 5 | Top 3 | >0.5 | >0.9 | >0.95 | Top 5 | Top 3 | |
| All instruments | 10 | 2 | 0 | 96 | 74 | 32 | 3 | 64 | 48 | 150 | 90 | 67 | 156 | 138 |
| ESI Trap | 10 | 2 | 1 | 95 | 74 | 34 | 3 | 61 | 47 | 139 | 96 | 78 | 148 | 125 |
The values indicate the number of peptides and product ions from the validated lists in Table 1 that appear in MRMaid results when filtered according to the criteria shown. The total numbers of validated peptides and product ions are 99 and 171, respectively. For each criteria category, the criteria become stricter from left to right.
ESI, electrospray ionization.