Table 2.
Comparative sequence analysis of single cysts from Sweh197 at thetpilocus
|
Sub-assemblageIsolate |
Material |
GenBank acc no |
Nucleotide position fromstart of gene |
|||
|---|---|---|---|---|---|---|
| 39* | 114 | 165* | 280 | |||
|
BIII/2924 |
|
AY228628 |
G |
C |
C |
A |
|
BIV/Ad-19 |
|
AF069560 |
A |
C |
T |
A |
|
Sweh197 |
Crude stool isolate |
JN579672 |
R |
Y |
Y |
R |
|
Sweh197_200 |
Single cyst |
JN579676 |
R |
Y |
Y |
R |
|
Sweh197_84 |
Single cyst |
JN579673 |
R |
C |
Y |
R |
|
Sweh197_201 |
|
|
R |
C |
Y |
R |
|
Sweh197_86 |
Single cyst |
JN579674 |
R |
Y |
C |
R |
|
Sweh197_98 |
|
|
R |
Y |
C |
R |
|
Sweh197_149 |
|
|
R |
Y |
C |
R |
|
Sweh197_213 |
|
|
R |
Y |
C |
R |
|
Sweh197_196 |
Single cyst |
JN579675 |
A |
C |
C |
G |
|
Sweh197_197 |
|
|
A |
C |
C |
G |
|
Sweh197_212 |
|
|
A |
C |
C |
G |
|
Sweh197_208 |
|
|
A |
C |
C |
G |
|
Sweh197_207 |
Single cyst |
EU272158 |
G |
T |
C |
A |
| Sweh197_215 | Single cyst | GU56428 | G | C | T | A |
* These nucleotide positions are substitution patterns proposed as markers for different B sub-assemblages [25].