Table 5.
Comparative sequence analysis of single cysts from Sweh207 at thebglocus
|
Sub-assemblage Isolate |
Material |
GenBank acc no |
Nucleotide position from start of gene |
||||||
|---|---|---|---|---|---|---|---|---|---|
| 201 | 210 | 228 | 273 | 285 | 354* | 537 | |||
|
BIII/BAH8 |
|
AY072727 |
C |
C |
A |
A |
T |
C |
C |
|
BIV/Nij5 |
|
AY072725 |
C |
T |
A |
A |
T |
T |
C |
|
Sweh207_65 |
Single cyst |
JN579677 |
C |
C |
A |
A |
T |
C |
T |
|
Sweh207_66 |
Single cyst |
HM165209 |
C |
T |
A |
A |
T |
C |
C |
|
Sweh207_133 |
|
|
C |
T |
A |
A |
T |
C |
C |
|
Sweh207_103 |
|
|
C |
T |
A |
A |
T |
C |
C |
|
Sweh207_105 |
Single cyst |
AY072727 |
C |
C |
A |
A |
T |
C |
C |
|
Sweh207_190 |
Single cyst |
JN579678 |
C |
C |
A |
G |
T |
C |
C |
|
Sweh207_61 |
Single cyst |
JN579679 |
C |
C |
A |
R |
T |
C |
C |
|
Sweh207_129 |
Single cyst |
JN579680 |
C |
T |
R |
A |
T |
C |
C |
|
Sweh207_106 |
Single cyst |
JN579681 |
C |
C |
R |
A |
T |
Y |
C |
|
Sweh207_107 |
Single cyst |
JN579682 |
C |
C |
A |
A |
Y |
C |
C |
|
Sweh207_181 |
|
|
C |
C |
A |
A |
Y |
C |
C |
|
Sweh207_184 |
Single cyst |
JN579683 |
C |
Y |
A |
A |
T |
C |
Y |
|
Sweh207_186 |
Single cyst |
JN579684 |
C |
Y |
A |
R |
T |
C |
C |
|
Sweh207_183 |
Single cyst |
JN579685 |
Y |
C |
A |
R |
T |
Y |
C |
| Sweh207_189 | Single cyst | JN579686 | Y | Y | R | R | T | Y | C |
* This nucleotide position is a substitution pattern proposed as a marker for different B sub-assemblages [10].