Table 2.
Homologous TDFs with high sequence similarity
| Hypothetical 1 | Hypothetical 2 | M6PIa | PIP1b | SOD CCc | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| |
01E01 |
02 C11 |
A02C03 |
A04H02 |
05 C11 |
08D03 |
06 C03 |
06E09 |
A04A08 |
A04G04 |
| MseI/TaqI* |
AC/TC |
TC/TC |
TG/CA |
CT/CA |
GT/AG |
GT/AC |
GT/AG |
TG/AG |
TC/CA |
AC/CA |
| bp% |
223 |
223 |
206 |
342 |
221 |
215 |
537 |
274 |
334 |
310 |
| Expression† |
dn L |
dn R |
dn R |
up R |
up R |
up R |
up R |
up L |
up R |
dn L |
| |
dn R |
|
|
|
|
|
dn R |
|||
| Similarity to AD genomes§ |
100% A |
95% A |
98% Gh |
99% Gh |
98% Gh |
99% Gh |
99% A |
99% A |
|
|
| |
98% D |
97% D |
|
|
|
|
98% D |
98% D |
100% Gh |
100% Gh |
| |
100% Gh |
98% Gh |
|
|
|
|
99% Gh |
99% Gh |
100% Gb |
100% Gb |
| 100% Gb | 98% Gb | 99% Gb | 99% Gb | |||||||
aMannose 6 phosphate isomerase; bplasma membrane intrinsic protein 1; csuperoxide dismutase copper chaperone.
*Two nucleotide extensions at 3’-termini of each selective primer set.
%Sizes of cDNA-AFLP bands.
†up and dn represent up-regulation and down-regulation, respectively in root (R) and leaf (L) tissues.
§Genomes from Gossypium arboreum (A), Gossypium raimondii (D), Gossypium hirsutum (Gh), and Gossypium barbadense (Gb).