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. 2012 Aug 1;12:125. doi: 10.1186/1471-2229-12-125

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Copyright ©2012 Berendzen et al.; licensee BioMed Central Ltd.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License ( http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Motif enrichment or depletion of specific cis-elements in auxin-responsive promoters from rice. Statistical significance of motif enrichment or depletion for specific ZRE, MRE/MYC and AuxRE related cis-elements in auxin-responsive promoters from Oryza sativa, 1–3 h after auxin treatment. A) Motif enrichment or depletion for individual motifs in promoters of auxin-regulated genes. B) Significant enrichment or depletion of bipartite motif modules comprising ZRE, MRE/MYC and AuxRE cis-elements in promoters of auxin-regulated genes. The embedded motifs have a variable, but maximal spacing of 100 bps. C) The significance level scale for the Bonferroni corrected p-values of parameters I and II is adapted from Figure 3.