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. 2012 Jul 27;8(9):2997–3002. doi: 10.1021/ct300284c

Figure 1.

Figure 1

RMSD of the aMD trajectory from the crystal structure. Red, blue, green, purple, and black colors correspond to the kinetic clusters identified in the 1 ms cMD BPTI simulation.34 For each frame, we identify what cluster we are closest to and color it accordingly. Only a handful of transitions to the green state were observed, and we highlight them with diamond markers.