Table 3.
Pfam accession |
Gene description |
# of ESTs |
GO Biological process |
Treatment (pptt) |
||||||
---|---|---|---|---|---|---|---|---|---|---|
EF | EF+ | E | F | MeJA | C | R | ||||
PF00305 |
Lipoxygenase |
1602 |
lipid biosynthetic process |
110 |
43 |
33 |
38 |
162 |
38 |
30.9 |
No family |
Sieve element-occluding protein |
1545 |
- |
245 |
40 |
66 |
19 |
86 |
33 |
27 |
PF00199 |
Catalase |
1159 |
response to stress |
73 |
24 |
28 |
25 |
54 |
19 |
6.7 |
PF00160 |
Peptidyl-prolyl cis-trans isomerase |
773 |
protein folding |
52 |
15 |
9 |
19 |
34 |
33 |
5.3 |
PF00227 |
Proteasome subunit |
341 |
response to stress |
21 |
8 |
5 |
4 |
24 |
9 |
3.9 |
PF05564 |
Auxin-repressed protein |
207 |
signal transduction |
26 |
3 |
- |
2 |
- |
- |
4.3 |
PF01717 |
Methionine synthase |
200 |
methionine biosynthetic process |
42 |
4 |
- |
2 |
16 |
9 |
8.7 |
PF01641 |
Methionine sulfoxide reductase |
58 |
catalytic activity |
34 |
1 |
- |
- |
- |
5 |
8.3 |
No family | Protein transport protein SFT2 | 16 | vesicle-mediated transport | 78 | - | - | - | - | - | 29.9 |
Treatments: C (untreated control), E (artificial scratching & eggs transferred), EF (egg deposition & feeding), F (feeding), MeJA (methyl jasmonate), mixed library EF + F. Relative Unitrans abundance calculated on counts by parts per ten thousand (pptt) based on the annotation to Plant UniProt (BLASTx, E-value ≤1e-20). Transcripts correlated on their predicted function to the Pfam = protein family database. R–values >3 were considered as significantly differentially expressed for the respective treatment against C (true positive rate of ~99%) by Test Statistics R [42].