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. 2012 Jun 15;13:242. doi: 10.1186/1471-2164-13-242

Table 3.

Identification of putative regulatory proteins with high occurrence in egg laying- and feeding-inducedUlmus minorleaves

Pfam accession
Gene description
# of ESTs
GO Biological process
Treatment (pptt)
        EF EF+ E F MeJA C R
PF00305
Lipoxygenase
1602
lipid biosynthetic process
110
43
33
38
162
38
30.9
No family
Sieve element-occluding protein
1545
-
245
40
66
19
86
33
27
PF00199
Catalase
1159
response to stress
73
24
28
25
54
19
6.7
PF00160
Peptidyl-prolyl cis-trans isomerase
773
protein folding
52
15
9
19
34
33
5.3
PF00227
Proteasome subunit
341
response to stress
21
8
5
4
24
9
3.9
PF05564
Auxin-repressed protein
207
signal transduction
26
3
-
2
-
-
4.3
PF01717
Methionine synthase
200
methionine biosynthetic process
42
4
-
2
16
9
8.7
PF01641
Methionine sulfoxide reductase
58
catalytic activity
34
1
-
-
-
5
8.3
No family Protein transport protein SFT2 16 vesicle-mediated transport 78 - - - - - 29.9

Treatments: C (untreated control), E (artificial scratching & eggs transferred), EF (egg deposition & feeding), F (feeding), MeJA (methyl jasmonate), mixed library EF + F. Relative Unitrans abundance calculated on counts by parts per ten thousand (pptt) based on the annotation to Plant UniProt (BLASTx, E-value ≤1e-20). Transcripts correlated on their predicted function to the Pfam = protein family database. R–values >3 were considered as significantly differentially expressed for the respective treatment against C (true positive rate of ~99%) by Test Statistics R [42].