Skip to main content
. 2012 Sep 11;13(Suppl 15):S14. doi: 10.1186/1471-2105-13-S15-S14

Table 3.

A comparison of the performance of four scoring functions in recovering the true underlying Bayesian network structures

AIC MDL fNML BDeu
GoldNet Min Mean Max STD Min Mean Max STD Min Mean Max STD Min Mean Max STD

Austra 3 10.72 21 5.02 0 1.50* 13 3.49 11 12.44 31 4.78 0 1.94 14 4.02
Breast 0 1.28 6 1.64 0 0.61 5 1.50 0 0.39 4 1.14 0 0.22* 4 0.94
Car 0 1.00 7 1.91 0 1.67 5 2.43 5 5.94 6 0.24 0 0.28* 5 1.18
Cleve 2 10.44 22 3.94 0 0.44* 5 1.34 0 0.94 12 2.82 1 1.44 7 1.46
Crx 9 15.28 24 4.20 3 4.67* 18 3.79 13 14.44 34 4.94 3 5.72 18 4.56
Diabetes 0 2.00 5 1.41 0 0.22* 3 0.73 0 0.22* 3 0.73 1 1.22 4 0.73
Glass 0 0.00* 0 0.00 0 0.00* 0 0.00 0 0.06 1 0.24 1 1.00 1 0.00
Heart 0 0.00* 0 0.00 0 0.00* 0 0.00 0 0.00* 0 0.00 0 0.00* 0 0.00
Hepatitis 17 21.83 31 4.13 0 0.44* 6 1.46 0 2.94 24 5.95 3 3.72 13 2.37
Iris 0 1.78 5 1.80 0 0.33 3 0.97 0 0.17* 3 0.71 1 1.33 4 0.97
Nursery 0 3.61* 12 3.99 0 4.94 8 3.28 8 9.22 16 2.18 0 4.39 8 2.77
Vehicle 0 0.72 4 1.07 0 1.11 16 3.77 0 0.39 7 1.65 0 0.22* 4 0.94
Voting 8 14.61 32 6.15 0 1.11* 16 3.77 0 2.50 31 7.42 0 1.28 19 4.47

This table shows SHD statistics about the networks learned using the sampled datasets for all scoring functions that we analyzed. For BDeu, we used the value of α that gave the lowest mean SHD. GoldNet gives the name of the network. We have used abbreviated names from Table 1, but the order of the datasets is the same in both tables. Min, Mean, Max and STD give the particular statistic for SHD for all sample sizes for the given network and scoring function. The scoring function with the lowest mean for each dataset is shown in bold.