Table 2.
Numbers of exonic and UTR loci with ≥20 mapped reads and the numbers of reads mapping to these loci
| Individual | GM19238 |
GM19239 |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Method | Loci | Ref | Non-ref | Other | Total | Ref % | Loci | Ref | Non-ref | Other | Total | Ref % |
| Unaltered | 685 | 29 084 | 22 230 | 425 | 51 739 | 56.7 | 772 | 23 882 | 18 358 | 463 | 42 703 | 56.5 |
| Masked | 645 | 23 268 | 21 868 | 408 | 45 544 | 51.6 | 727 | 19 390 | 18 038 | 459 | 37 887 | 51.8 |
| Enhanced | 715 | 29 445 | 26 150 | 432 | 56 027 | 53.0 | 802 | 24 171 | 20 902 | 483 | 45 556 | 53.6 |
The enhanced reference approach was able to map the largest number of reads.