Table 4.

A few instances where our approach is able to map >100 reads where the other methods map very few reads

SNP ID	Chromosome	Position (hg 18)	Individual	Unaltered		Masked		Enhanced
				Ref	Non-ref	Ref	Non-ref	Ref	Non-ref
rs1807676	chr22	25 613 521	GM19238	0	0	0	0	0	101
rs11619791	chr13	24 568 984	GM19238	5	3	2	1	4	140
rs12610462	chr19	22 343 302	GM19238	0	13	0	8	0	259
rs1807676	chr22	25 613 521	GM19239	0	1	0	1	0	101
rs7662013	chr4	174 791 881	GM19239	0	18	0	14	0	171