Table 1.
Details on Datasets Used for Developing Comprehensive Transcriptome Assembly (CcTA v2).
| Dataset/sequencing platform | Genotype | Tissues | Source | Number of transcript reads |
| Dataset I | ||||
| Illumina GA IIx | ICPL 332 | SMD-challenged leaves | ICRISAT/NCGR | 16 361 115 |
| Illumina GA IIx | ICPW 94 | FW-challenged roots | ICRISAT/NCGR | 15 828 791 |
| Illumina GA IIx | ICPL 99050 | FW-challenged roots | ICRISAT/NCGR | 13 498 156 |
| Illumina GA IIx | ICP 7035 | SMD-challenged leaves | ICRISAT/NCGR | 13 223 516 |
| Illumina GA IIx | ICPB 2049 | FW-challenged roots | ICRISAT/NCGR | 11 494 670 |
| Illumina GA IIx | BSMR 736 | SMD-challenged leaves | ICRISAT/NCGR | 11 065 219 |
| Illumina GA IIx | ICP 28 | FW-challenged roots | ICRISAT/NCGR | 9 721 562 |
| Illumina GA IIx | ICPL 20096 | SMD-challenged leaves | ICRISAT/NCGR | 9 507 797 |
| Illumina GA IIx | ICPL 87091 | FW-challenged roots | ICRISAT/NCGR | 8 977 567 |
| Illumina GA IIx | TAT 10 | SMD-challenged leaves | ICRISAT/NCGR | 7 932 691 |
| Illumina GA IIx | TTB 7 | SMD-challenged leaves | ICRISAT/NCGR | 4 122 216 |
| Illumina GA IIx | Asha (ICPL 87119) | FW-challenged roots | ICRISAT/NCGR | 7 182 619 |
| Dataset II | ||||
| FLX/454 | Asha (ICPL 87119) | Pooled RNA from 4 tissues | NRCPB | 906 300 |
| FLX/454 | UPAS 120 | Pooled RNA from 4 tissues | NRCPB | 790 424 |
| Dataset III | ||||
| FLX/454 | PusaAgeti | Pooled RNA from 31 tissues | ICRISAT | 494 353 |
| Dataset IV | ||||
| Sanger | ICPL 20102 | FW-challenged roots | ICRISAT | 3168 |
| Sanger | ICP 2376 | FW-challenged roots | ICRISAT | 2880 |
| Sanger | TTB 7 | SMD-challenged leaves | ICRISAT | 1920 |
| Sanger | ICP 7035 | SMD-challenged leaves | ICRISAT | 1920 |
| Sanger | Asha (ICPL 87119) and UPAS 120 | Root and shoot | NCBI dbEST | 8465 |
SMD, sterility mosaic disease; FW, Fusarium wilt, ICRISAT, International Crops Research Institute for the Semi-Arid Tropics; NCGR, National Center for Genome Resources; NRCPB, National Research Center on Plant Biotechnology; NCBI, National Centre for Biotechnology Information.