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. 2012 Sep 12;7(9):e44333. doi: 10.1371/journal.pone.0044333

Figure 2. Analysis of nearly full length genome of CNGZD using Recombinant Identification Program (RIP) (version 3.0).

Figure 2

Mosaic structures of subtype B (in blue) and C (in violet) in both CNGZD and the reference strain of CRF07_BC (97CN54) were figured out by software RIP and the recombinant profile of CNGZD was similar to the reference strain 97CN54. Five segments from subtype B were found in subtype C backbone and the recombination points located at positions in p17/p24, p7/p6, RT, Vpr/Vpu and nef regions of CNGZD and 97CN54, respectively. Window size: 200; threshold for statistical significance: 90%.