Table 1. Genomic regions covered by sequences of CNGZD.
CDS | Positionin HXB2 | Amino acidin HXB2 | Position in CNGZD |
NCR | 654–789 | 7–52 | 1–136 |
Gag | 790–2292 | 1–501 | 137–1624 |
p17 | 790–1185 | 1–132 | 137–523 |
p24 | 1186–1878 | 1–231 | 524–1216 |
p2 | 1879–1920 | 1–14 | 1217–1252 |
p7 | 1921–2085 | 1–55 | 1253–1417 |
p1 | 2086–2133 | 1–16 | 1418–1465 |
p6 | 2134–2292 | 1–53 | 1466–1624 |
Pol | 2085–5096 | 1–1004 | 1417–4428 |
p2p7p1p6 | 1879–2292 | 1–138 | 1217–1624 |
GagPolTF | 2085–2252 | 1–56 | 1417–1584 |
Protease | 2253–2549 | 1–99 | 1585–1881 |
RT | 2550–3869 | 1–440 | 1882–3201 |
RNase | 3870–4229 | 1–120 | 3202–3561 |
Integrase | 4230–5096 | 1–289 | 3562–4428 |
Vif | 5041–5619 | 1–193 | 4373–4954 |
Vpr | 5559–5850 | 1–98 | 4894–5184 |
Tat1 | 5831–6045 | 1–72 | 5165–5379 |
Rev1 | 5970–6045 | 1–26 | 5304–5379 |
Vpu | 6062–6310 | 1–83 | 5396–5641 |
gp160 | 6225–8795 | 1–857 | 5559–8132 |
gp120 | 6225–7757 | 1–511 | 5559–7073 |
gp41 | 7758–8795 | 1–346 | 7074–8132 |
Tat2 | 8379–8469 | 1–31 | 7695–7785 |
Rev2 | 8379–8653 | 1–92 | 7695–7990 |
Nef | 8797–9417 | 1–207 | 8133–8750 |
LTR3 | 9086–9673 | 1–184 | 8419–8992 |
All the coding sequences (CDSs) in CNGZD were pointed out and the corresponding position of each CDS in the virus genome was indicated in both submitted sequence and HIV-1 reference strain HXB2 by the online software HIV Sequence Locator.