Table 2.
Pore-lining residue, pore-lining helix, topology and pore stoichiometry results for all targets
| Target | Per-residue MCC |
Pore-lining helices |
Topology |
Pore stoichiometry |
|||
|---|---|---|---|---|---|---|---|
| Observed | Predicted | Correct | Over/Under | Observed | Predicted | ||
| 1E12_A |
0.04 |
4 |
2 |
1 |
0 |
1 |
1 |
| 1FFT_A |
0.28 |
3 |
3 |
0 |
3 |
1 |
1 |
| 1KQG_B |
−0.42 |
1 |
0 |
0 |
0 |
6 |
6 |
| 1KQG_C |
0.03 |
2 |
0 |
1 |
0 |
6 |
5 |
| 1L7V_B |
0.63 |
2 |
2 |
0 |
1 |
2 |
1 |
| 1LDI_A |
0.41 |
5 |
2 |
1 |
0 |
1 |
3 |
| 1LNQ_A |
0.76 |
1 |
0 |
1 |
0 |
4 |
4 |
| 1P7B_A |
0.52 |
1 |
1 |
1 |
0 |
4 |
4 |
| 1PW4_A |
0.50 |
7 |
3 |
1 |
0 |
1 |
1 |
| 1R3J_C |
0.54 |
1 |
0 |
1 |
0 |
4 |
6 |
| 1T9Y_A |
0.31 |
6 |
2 |
0 |
−4 |
1 |
1 |
| 1XL6_A |
0.51 |
1 |
1 |
1 |
0 |
4 |
4 |
| 1XME_A |
0.27 |
3 |
3 |
1 |
0 |
1 |
1 |
| 1XQF_A |
0.52 |
5 |
4 |
0 |
−1 |
1 |
1 |
| 1Z98_A |
0.35 |
3 |
3 |
1 |
0 |
1 |
1 |
| 1ZLL_E |
0.00 |
1 |
0 |
0 |
0 |
5 |
3 |
| 2AHY_A |
0.52 |
1 |
0 |
1 |
0 |
4 |
5 |
| 2B2F_A |
0.49 |
4 |
3 |
0 |
−2 |
1 |
1 |
| 2BG9_A |
0.15 |
1 |
1 |
1 |
0 |
5 |
2 |
| 2BG9_E |
0.37 |
1 |
1 |
1 |
0 |
5 |
2 |
| 2C3E_A |
−0.10 |
6 |
3 |
0 |
−2 |
1 |
1 |
| 2C8L_A |
0.37 |
4 |
3 |
1 |
0 |
1 |
1 |
| 2D57_A |
0.28 |
4 |
3 |
1 |
0 |
1 |
1 |
| 2F2B_A |
0.05 |
3 |
1 |
1 |
0 |
1 |
3 |
| 2GFP_A |
0.24 |
6 |
2 |
1 |
0 |
1 |
1 |
| 2HYD_A |
0.22 |
4 |
1 |
0 |
−1 |
2 |
2 |
| 2OAR_A |
0.00 |
1 |
1 |
1 |
0 |
5 |
3 |
| 2OAU_A |
0.11 |
1 |
0 |
1 |
0 |
7 |
4 |
| 2ONK_C |
0.49 |
3 |
1 |
1 |
0 |
2 |
2 |
| 2QFI_A |
0.26 |
2 |
1 |
1 |
0 |
2 |
3 |
| 2QKS_A |
0.44 |
1 |
1 |
1 |
0 |
4 |
4 |
| 2QTS_A |
0.50 |
1 |
1 |
1 |
0 |
3 |
5 |
| 2R6G_F |
0.33 |
2 |
1 |
1 |
0 |
2 |
2 |
| 2R6G_G |
0.07 |
3 |
1 |
1 |
0 |
2 |
1 |
| 2RDD_B |
−0.61 |
1 |
0 |
0 |
0 |
3 |
5 |
| 2W2E_A |
0.38 |
4 |
3 |
1 |
0 |
1 |
1 |
| 2ZW3_A |
−0.36 |
1 |
0 |
1 |
0 |
6 |
3 |
| 3B8C_A |
0.45 |
5 |
3 |
1 |
0 |
1 |
1 |
| 3B9W_A |
0.46 |
5 |
4 |
1 |
0 |
1 |
1 |
| 3BEH_A |
0.22 |
1 |
0 |
0 |
−1 |
4 |
2 |
| 3C02_A |
0.37 |
4 |
4 |
1 |
0 |
1 |
1 |
| 3DDL_A |
0.11 |
4 |
2 |
1 |
0 |
1 |
1 |
| 3DHW_A |
0.20 |
2 |
1 |
1 |
0 |
2 |
2 |
| 3EAM_A |
0.30 |
1 |
0 |
0 |
−1 |
5 |
3 |
| 3GIA_A |
0.32 |
4 |
3 |
1 |
0 |
1 |
1 |
| 3H9V_A |
0.13 |
2 |
1 |
1 |
0 |
3 |
4 |
| 3HD6_A |
0.50 |
4 |
4 |
1 |
0 |
1 |
1 |
| 3K3F_A |
0.44 |
4 |
2 |
1 |
0 |
1 |
1 |
| 3KG2_A |
0.37 |
1 |
1 |
0 |
1 |
4 |
1 |
| 3MKT_A |
0.32 |
5 |
4 |
1 |
0 |
1 |
1 |
| 3O0R_B |
0.11 |
5 |
0 |
1 |
0 |
1 |
1 |
| 3P5N_A | 0.10 | 4 | 3 | 1 | 0 | 1 | 1 |
A correct topology (requiring the correct number and placement of all transmembrane helices but not N-terminus) is indicated by 1, and otherwise 0. Over/Under corresponds to the number of over-predicted or under-predicted transmembrane helices.