Table 4.
Comparison of Arapan-S with all the assemblers on Three Genomes Composed of eight Segments
| Species | Assembler | Contigs ≥ 400 bp | Total Length | Mean size (bp) | N50 (bp) | Largest contig (bp) | Genome coverage (%) |
|---|---|---|---|---|---|---|---|
|
Influenza A Virus A/Memphis/1/71(H3N2) |
Arapan-S |
8 |
12598 |
1574.75 |
1584 |
2311 |
94.03 |
| |
ABySS |
14 |
12897 |
921.21 |
1280 |
1801 |
96.27 |
| |
SSAKE |
1 |
555 |
555.00 |
- |
555 |
4.14 |
| |
Velvet |
14 |
10774 |
769.57 |
789 |
1781 |
80.42 |
| |
QSRA |
17 |
12570 |
739.41 |
700 |
1828 |
93.83 |
| |
Minimus |
9 |
13156 |
1461.78 |
|
2242 |
98.20 |
| |
Mira |
14 |
14399 |
1028.50 |
1396 |
2080 |
107.48 |
|
Influenza A Virus A/Swine/Colorado/1/77/(H3N2) |
Arapan-S |
8 |
13120 |
1640 |
2151 |
2310 |
99.13 |
| |
ABySS |
9 |
12478 |
1386.44 |
1634 |
2262 |
93.79 |
| |
SSAKE |
6 |
4287 |
714.50 |
- |
1409 |
32.22 |
| |
Velvet |
12 |
9783 |
815.25 |
494 |
1867 |
73.53 |
| |
QSRA |
16 |
9400 |
587.50 |
468 |
1200 |
70.65 |
| |
Minimus |
8 |
13325 |
1665.62 |
2199 |
2309 |
100.16 |
| |
Mira |
10 |
14678 |
1467.80 |
1780 |
2371 |
110.33 |
|
Influenza A Virus A/Weiss/43/(H1N1) |
Arapan-S |
8 |
13300 |
1662.50 |
2194 |
2313 |
99.47 |
| |
ABySS |
11 |
13108 |
1191.64 |
1716 |
2274 |
98.03 |
| |
SSAKE |
3 |
1616 |
538.67 |
- |
572 |
12.09 |
| |
Velvet |
9 |
9764 |
1084.89 |
1006 |
1696 |
73.02 |
| |
QSRA |
16 |
11755 |
734.69 |
573 |
1916 |
87.91 |
| |
Minimus |
8 |
13369 |
1671.12 |
2194 |
2313 |
99.98 |
| Mira | 11 | 15139 | 1376.27 | 1583 | 2359 | 113.22 |
Only contigs whose lengths ≥ 400 were selected. Each species has eight segments that constitute its genome.