Table 3.
Sequences variations of regulatory element among different HMW-GS promoters
| Alleles | E motif (TGTAACCC) | N motif (TGAGTCAT) | Partial Enhancer (TTTGCAAA) | Enhancer (GTTTTGCAAAGCTCCAATTGCTCCTTGCTT ATCCAGCT) |
TATA box (CTATAAAAG) |
Start (TTATCA) |
|---|---|---|---|---|---|---|
|
1Ax2* |
TGTAAATC |
TGAGTCAC |
TTTGCAAA |
GTTTTA CAAAGCTCCAATTGCTCCTT GCTT ATCCAGCT |
CTATAAAAG |
TCTTCA |
|
1Bx7 |
TGTAAATC |
TGAGTCAT |
TTTGCGGA |
GTTTTG C- AAGCTCCAATTGCTCCTT ACTT ATCCAGCT |
CTATAAAAG |
TCATCA |
|
1Dx2 |
TGTAAACC |
TGAGTCAC |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT GCTTATCCAGCT |
CTATAAAAG |
TTATCA |
|
1Dx5 |
TGTAAACC |
TGAGTCAC |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT GCTTATCCAGCT |
CTATAAAAG |
TTATCA |
|
1Sbx2.9 |
TGTAAATC |
TGAGTCAC |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT TCTTATTCAGCT |
CTATAAAAG |
TCATCA |
|
1Slx2.9 |
TGTAAATC |
TGAGTCAC |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT TCTTATTCAGCT |
CTATAAAAG |
TCATCA |
|
1Sshx2.9 |
TGTAAATC |
TGAGTCAC |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT TCTTATTCAGCT |
CTATAAAAG |
TCATCA |
|
1Ay |
TGTAAATC |
CGAGTCAT |
deleted |
GTTTTG CAAAGCTCCAATTGCTCCTT GCTTATCCAGCT |
CTATAAAAG |
TCATCA |
|
1By9 |
TGTAAATC |
TGATTCAT |
TCTACAAA |
GTTTTG CAAAACTCCAATTGCTCCTT GCTTATCCAGCT |
CTATAAAAG |
TCATCA |
|
1Dy10 |
TGTAAATC |
TGAGTCAT |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT GCTTATCCAGCT |
CTATAAAAG |
TCATCA |
|
1Sby2.2 |
TGTAAACC |
TGAGTCAC |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT GCTTATCCAGCT |
CTATAAAAG |
TCATCA |
|
1Sly2.3 |
TGTAAATC |
TGAGTCAT |
TTTGCAAA |
GTTTTG CAAAGCTCCAATTGCTCCTT GCTTATCCAGCT |
CTATAAAAG |
TTATCA |
| 1Sshy2.3 | TGTAAATC | TGAGTCAT | deleted | GTTTTG CAAAGCTCCAATTGCTCCTT GCTTATCCAGCT | CTATAAAAG | TCATCA |
The position of each variation is underlined in the corresponding locus of consensus sequences.