Table 3. Genomic distribution of differentiated mean RXpY values in HRV A, B and C.
HRV-A | HRV-B | HRV-C | ||||||||||
RUpA | RUpG | RCpA | RCpG | RUpA | RUpG | RCpA | RCpG | RUpA | RUpG | RCpA | RCpG | |
5′UTR | 1.00 | 1.33 | 1.07 | 0.57 | 1.08 | 1.22 | 0.96 | 0.74 | 1.03 | 1.39 | 1.07 | 0.61 |
VP4 | 0.65 | 1.09 | 1.43 | 0.32 | 0.57 | 1.24 | 1.56 | 0.34 | 0.65 | 1.29 | 1.43 | 0.37 |
VP2 | 0.87 | 1.39 | 1.47 | 0.23 | 0.82 | 1.47 | 1.52 | 0.23 | 0.86 | 1.43 | 1.46 | 0.32 |
VP3 | 0.89 | 1.40 | 1.49 | 0.18 | 0.86 | 1.35 | 1.50 | 0.15 | 0.83 | 1.40 | 1.54 | 0.31 |
VP1 | 0.84 | 1.48 | 1.48 | 0.20 | 0.80 | 1.40 | 1.40 | 0.21 | 0.76 | 1.41 | 1.39 | 0.23 |
2A | 0.89 | 1.52 | 1.50 | 0.16 | 0.90 | 1.33 | 1.47 | 0.18 | 0.95 | 1.67 | 1.44 | 0.18 |
2B | 0.88 | 1.20 | 1.39 | 0.14 | 0.76 | 1.24 | 1.54 | 0.11 | 0.85 | 1.36 | 1.57 | 0.28 |
2C | 0.75 | 1.49 | 1.29 | 0.23 | 0.69 | 1.38 | 1.41 | 0.20 | 0.72 | 1.50 | 1.31 | 0.22 |
3A | 1.05 | 1.28 | 1.23 | 0.13 | 0.94 | 1.36 | 1.36 | 0.06 | 0.92 | 1.21 | 1.34 | 0.17 |
3B | 0.86 | 1.12 | 1.02 | 0.13 | 0.94 | 1.09 | 1.21 | 0.31 | 0.95 | 1.27 | 1.04 | 0.15 |
3C | 0.86 | 1.30 | 1.35 | 0.15 | 0.83 | 1.22 | 1.41 | 0.25 | 0.79 | 1.60 | 1.45 | 0.27 |
3D | 0.84 | 1.31 | 1.25 | 0.23 | 0.78 | 1.29 | 1.30 | 0.17 | 0.80 | 1.33 | 1.16 | 0.24 |
3′ UTR | 0.97 | 0.88 | 0.85 | 0.00 | 0.98 | 0.67 | 0.86 | 0.00 | 1.05 | 1.35 | 0.77 | 0.00 |
RCpG values printed in bold are highest (minimum suppression) in the 5′ UTR. Only RUpG values printed in italic are kept in differentiated levels (RXpY>1.19) in 5′. RUpA is highly suppressed in the VP4 region (bold and italic).