Table 1. Putative CYC Binding Sites Found in Upstream Sequences of CYC2 Clade Genes.
| Speciesa | Gene | CYC Binding Siteb | Reference or Source | Family (Subclass) |
|---|---|---|---|---|
| Arabidopsis | TCP1 | No | Cubas et al. (2001); NCBI | Brassicaceae (Rosids) |
| B. rapa | TCP1-like gene | No | NCBI | Brassicaceae (Rosids) |
| Grape | LOC100256607 | No | NCBI | Vitaceae (Rosids) |
| Tomato | TCP7 | No | NCBI | Solanaceae (Asterids) |
| Soybean | Glyma08g28690 | cttGACCCACtat (−1603) | PlantGDB | Fabaceae (Rosids) |
| tttGACCCTCtct (−468) | ||||
| Glyma13g07480 | ggtGACCCACaaa (−1198) | |||
| Glyma19g05910 | ggtGACCCACaaa (−1252) | |||
| Glyma10g39140 | tttGGCCCCAaag (−2284) | |||
| M. truncatula | CYC1A | tcaGGGCCCTgcc (−1901) | NCBI | Fabaceae (Rosids) |
| M. guttatus | CYC-like gene | cccGGCCCTCttc (−1894) | NCBI | Phrymaceae (Asterids) |
| aatGGGGCCCgtt (−1673) | ||||
| ctcGGCCCCCgcc (−401) | ||||
| P. heterotricha | CYC1C | tggGGCCCCTCtgt (−942) tggGGCCCCCCctt (−960) | Gao et al. (2008); this study | Gesneriaceae (Asterids) |
| CYC1D |
a
The top half is actinomorphic species, and the bottom half is zygomorphic species.
b
The sequences with capital letters represent the consensus CYC binding sites. The 3-kb upstream region of respective gene is analyzed in this study. The number in the parentheses represents the position of each site relative to the start codon of respective gene.
NCBI, National Center for Biotechnology Information.