Table 2.
Statistics for alignment of sequence reads from the 352 kb region associated with the Grey allele
| |
|
Breed |
||||||
|---|---|---|---|---|---|---|---|---|
| |
|
Lipizzaner |
Arabian |
Noriker |
Icelandic |
Knabstrupper |
Appaloosa |
Quarter Horse |
| Grey genotype | G/G | g/g | g/g | g/g | g/g | g/g | g/g | |
| Reads |
Av. cover |
96 |
52 |
7 |
102 |
29 |
10 |
101 |
| SNPs |
Homozygous |
101 |
103 |
133 |
422 |
67 |
18 |
100 |
| |
Heterozygous |
6 |
13 |
6 |
3 |
247 |
47 |
145 |
| Total | 107 | 116 | 139 | 425 | 314 | 65 | 245 | |
Data from eight horses representing seven different breeds were compared with the horse genome reference sequence (Sep. 2007 Broad/EquCab2 assembly). SNP calling was performed based on alignments with the horse reference sequence.