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. 2012 Sep 14;7(9):e44771. doi: 10.1371/journal.pone.0044771

Table 8. Expression of ECM-related genes between PN11 and PN56.

Gene symbol Description Mean log intensity for PN11 Mean log intensity for PN56 Fold Difference
A. Collagens
Col11a1 collagen, type XI, alpha 1 10.77 4.05 0.01
Col9a1 collagen, type IX, alpha 1 11.51 4.81 0.01
Col5a2 collagen, type V, alpha 2 12.06 5.95 0.01
Col5a1 collagen, type V, alpha 1 10.43 4.50 0.02
Col3a1 collagen, type III, alpha 1 11.26 5.81 0.02
Col6a2 collagen, type VI, alpha 2 12.35 7.49 0.03
Col6a1 collagen, type VI, alpha 1 12.49 7.97 0.04
Col24a1 collagen, type XXIV, alpha 1 7.84 3.32 0.04
Col1a2 collagen, type I, alpha 2 13.04 8.71 0.05
Col14a1 collagen, type XIV, alpha 1 9.76 5.75 0.06
Col27a1 collagen, type XXVII, alpha 1 8.78 5.03 0.07
Col1a1 collagen, type I, alpha 1 12.83 9.08 0.08
Col2a1 collagen, type II, alpha 1 7.02 3.32 0.08
Col16a1 collagen, type XVI, alpha 1 10.92 7.52 0.10
Col11a2 collagen, type XI, alpha 2 7.33 4.04 0.10
Col6a3 collagen, type VI, alpha 3 12.48 9.36 0.12
Col5a3 collagen, type V, alpha 3 7.56 4.47 0.12
Col13a1 collagen, type XIII, alpha 1 7.10 4.11 0.13
Col15a1 collagen, type XV, alpha 1 6.78 3.85 0.13
Col20a1 collagen, type XX, alpha 1 6.01 3.32 0.16
Col4a2 collagen, type IV, alpha 2 10.76 8.37 0.19
Col8a1 collagen, type VIII, alpha 1 10.90 8.51 0.19
Col4a1 collagen, type IV, alpha 1 11.14 8.99 0.23
Col12a1 collagen, type XII, alpha 1 12.32 10.45 0.28
Col18a1 collagen, type XVIII, alpha 1 7.48 5.64 0.28
Col4a5 collagen, type IV, alpha 5 11.08 9.81 0.42
Col23a1 collagen, type XXIII, alpha 1 6.44 5.22 0.43
Col7a1 collagen, type VII, alpha 1 9.90 8.74 0.45
B. Other ECM-related proteins
Lamb1-1 laminin B1 subunit 1 8.68 7.56 0.46
Lama1 laminin, alpha 1 5.30 3.32 0.25
Lama2 laminin, alpha 2 8.86 5.40 0.09
Lama4 laminin, alpha 4 7.65 3.41 0.05
Lamb2 laminin, beta 2 8.33 6.32 0.25
Lamc1 laminin, gamma 1 9.09 7.01 0.24
Lgals1 lectin, galactose binding, soluble 1 11.61 8.00 0.08
Lgals7 lectin, galactose binding, soluble 7 8.13 6.13 0.25
Lman1 lectin, mannose-binding, 1 9.95 8.89 0.48
Lum Lumican 12.81 10.12 0.16
Sdc2 syndecan 2 7.75 6.68 0.48
Sdc3 syndecan 3 8.86 6.07 0.15
Sdc4 syndecan 4 10.70 8.21 0.18
Kera keratocan 12.81 9.27 0.09
Vim vimentin 11.64 8.46 0.11
Fndc1 fibronectin type III domain containing 1 9.31 6.74 0.17
Fndc3b fibronectin type III domain containing 3B 9.45 8.13 0.40
Fndc4 fibronectin type III domain containing 4 6.29 4.22 0.24
Fndc5 fibronectin type III domain containing 5 6.34 3.69 0.16
Chad chondroadherin 7.63 4.18 0.09
Chpf chondroitin polymerizing factor 8.01 5.53 0.18
Chpf2 chondroitin polymerizing factor 2 8.41 6.42 0.25
Chsy3 chondroitin sulfate synthase 3 8.48 5.71 0.15
Chst1 carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 5.81 4.76 0.48
Chst14 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14 7.87 6.29 0.33
Chst5 carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5 10.46 9.15 0.40
Chst7 carbohydrate (N-acetylglucosamino) sulfotransferase 7 6.16 3.62 0.17
Chst11 carbohydrate sulfotransferase 11 7.89 5.63 0.21
Chst12 carbohydrate sulfotransferase 12 7.30 6.03 0.41
Chst2 carbohydrate sulfotransferase 2 5.93 3.71 0.22
Has2 hyaluronan synthase 2 7.34 5.83 0.35