Table 1. Arabidopsis Co-expression Network Properties.

Network	Arrays	Nodes	Edges	<k>	PCC	MCL	LCM
Aerial	231	1,780	5,217	5.9	0.862	342	278
Flower	146	972	8,043	16.5	0.941	113	187
Leaf	877	920	4,553	9.9	0.902	148	181
Root	640	1,690	9,537	11.3	0.837	297	323
Rosette	268	1,627	5,867	7.2	0.864	285	289
Seedling	675	1,722	13,562	15.8	0.836	261	435
Seed	108	1,081	3,574	6.6	0.942	201	177
Shoot	305	800	4,699	11.7	0.926	119	172
Whole	771	1,735	17,111	19.7	0.851	211	426
Global	4,566	2,606	95,004	72.9	0.487	236	810

<k>  =  Average connectivity;

PCC  =  Pearson correlation coefficient significance threshold;

MCL  =  Markov clustering modules;

LCM  =  Link community modules.