Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1974 Sep;1(9):1153–1164. doi: 10.1093/nar/1.9.1153

Replication of colicinogenic factor E 1 DNA: evidence for a discontinuous replication mechanism

Walter L Staudenbauer 1
PMCID: PMC344337  PMID: 4616225

Abstract

The mechanism of Col E 1 DNA replication was investigated in a plasmolysed cell system prepared from chloramphenicoltreated E. coli JC 411 (Col E 1). After pulse-labelling with 3H-dTTP a considerable fraction of the newly synthesized DNA was recovered as single-stranded fragments. Upon alkali denaturation the pulse label was found in DNA chains sedimenting slower than unit length Col E 1 strands with a prominent peak at 5 S. During a chase with unlabeled precursors the label is transferred nearly completely into supercoiled Col E 1 DNA. DNA ligase appears to be required for the joining of the 5 S pieces since in the absence of NAD an accumulation of short fragments is observed.

Full text

PDF
1153

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Bazaral M., Helinski D. R. Circular DNA forms of colicinogenic factors E1, E2 and E3 from Escherichia coli. J Mol Biol. 1968 Sep 14;36(2):185–194. doi: 10.1016/0022-2836(68)90374-4. [DOI] [PubMed] [Google Scholar]
  2. Blair D. G., Sherratt D. J., Clewell D. B., Helinski D. R. Isolation of supercoiled colicinogenic factor E 1 DNA sensitive to ribonuclease and alkali. Proc Natl Acad Sci U S A. 1972 Sep;69(9):2518–2522. doi: 10.1073/pnas.69.9.2518. [DOI] [PMC free article] [PubMed] [Google Scholar]
  3. Clewell D. B. Nature of Col E 1 plasmid replication in Escherichia coli in the presence of the chloramphenicol. J Bacteriol. 1972 May;110(2):667–676. doi: 10.1128/jb.110.2.667-676.1972. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Fuke M., Inselburg J. Electron microscopic studies of replicating and catenated colicin factor E1 DNA isolated from minicells (DNA replication). Proc Natl Acad Sci U S A. 1972 Jan;69(1):89–92. doi: 10.1073/pnas.69.1.89. [DOI] [PMC free article] [PubMed] [Google Scholar]
  5. Gilbert W., Dressler D. DNA replication: the rolling circle model. Cold Spring Harb Symp Quant Biol. 1968;33:473–484. doi: 10.1101/sqb.1968.033.01.055. [DOI] [PubMed] [Google Scholar]
  6. Godson G. N., Vapnek D. A simple method of preparing large amounts of phiX174 RF 1 supercoiled DNA. Biochim Biophys Acta. 1973 Apr 11;299(4):516–520. doi: 10.1016/0005-2787(73)90223-2. [DOI] [PubMed] [Google Scholar]
  7. Inselburg J., Fuke M. Isolation of catenated and replicating DNA molecules of colicin factor E1 from minicells. Proc Natl Acad Sci U S A. 1971 Nov;68(11):2839–2842. doi: 10.1073/pnas.68.11.2839. [DOI] [PMC free article] [PubMed] [Google Scholar]
  8. Inselburg J., Fuke M. Replicating DNA: structure of colicin factor E1. Science. 1970 Aug 7;169(3945):590–592. doi: 10.1126/science.169.3945.590. [DOI] [PubMed] [Google Scholar]
  9. Iyer V. N., Rupp W. D. Usefulness of benzoylated naphthoylated DEAE-cellulose to distinguish and fractionate double-stranded DNA bearing different extents of single-stranded regions. Biochim Biophys Acta. 1971 Jan 1;228(1):117–126. doi: 10.1016/0005-2787(71)90551-x. [DOI] [PubMed] [Google Scholar]
  10. Magnusson G. Hydroxyurea-induced accumulation of short fragments during polyoma DNA replication. I. Characterization of fragments. J Virol. 1973 Sep;12(3):600–608. doi: 10.1128/jvi.12.3.600-608.1973. [DOI] [PMC free article] [PubMed] [Google Scholar]
  11. Masamune Y., Richardson C. C. Enzymatic breakage and joining of deoxyribonucleic acid. IV. DNA synthesis in E. coli infected with ligase-negative mutants of phage T4. Proc Natl Acad Sci U S A. 1968 Dec;61(4):1328–1335. doi: 10.1073/pnas.61.4.1328. [DOI] [PMC free article] [PubMed] [Google Scholar]
  12. Messing J., Staudenbauer W. L., Hofschneider P. H. Replication of the minicircular DNA of Escherichia coli 15. Properties of newly replicated open circular DNA molecules. Eur J Biochem. 1974 May 2;44(1):293–297. doi: 10.1111/j.1432-1033.1974.tb03485.x. [DOI] [PubMed] [Google Scholar]
  13. Oishi M. Studies of DNA replication in vivo. 3. Accumulation of a single-stranded isolation product of DNA replication by conditional mutant strains of T4. Proc Natl Acad Sci U S A. 1968 Jul;60(3):1000–1006. doi: 10.1073/pnas.60.3.1000. [DOI] [PMC free article] [PubMed] [Google Scholar]
  14. STUDIER F. W. SEDIMENTATION STUDIES OF THE SIZE AND SHAPE OF DNA. J Mol Biol. 1965 Feb;11:373–390. doi: 10.1016/s0022-2836(65)80064-x. [DOI] [PubMed] [Google Scholar]
  15. Sherratt D. J., Helinski D. R. Replication of colicinogenic factor E1 in Escherichia coli. Properties of newly replicated supercoils. Eur J Biochem. 1973 Aug 1;37(1):95–99. doi: 10.1111/j.1432-1033.1973.tb02962.x. [DOI] [PubMed] [Google Scholar]
  16. Staudenbauer W. L., Hofschneider P. H. Membrane attachment of replicating parental DNA molecules of bacteriophage M13. Biochem Biophys Res Commun. 1971 Mar 19;42(6):1035–1041. doi: 10.1016/0006-291x(71)90008-8. [DOI] [PubMed] [Google Scholar]
  17. Staudenbauer W. L., Hofschneider P. H. Replication of bacteriophage M13 DNA in plasmolysed Escherichia coli cells. Biochem Biophys Res Commun. 1973 Sep 18;54(2):578–584. doi: 10.1016/0006-291x(73)91462-9. [DOI] [PubMed] [Google Scholar]
  18. Sugimoto K., Okazaki T., Okazaki R. Mechanism of DNA chain growth, II. Accumulation of newly synthesized short chains in E. coli infected with ligase-defective T4 phages. Proc Natl Acad Sci U S A. 1968 Aug;60(4):1356–1362. doi: 10.1073/pnas.60.4.1356. [DOI] [PMC free article] [PubMed] [Google Scholar]
  19. Zimmerman S. B., Little J. W., Oshinsky C. K., Gellert M. Enzymatic joining of DNA strands: a novel reaction of diphosphopyridine nucleotide. Proc Natl Acad Sci U S A. 1967 Jun;57(6):1841–1848. doi: 10.1073/pnas.57.6.1841. [DOI] [PMC free article] [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES