Table 5.
GO terms enriched in orthologs, which are only differentially expressed inP. pacificus
|
GO:BP terms enriched in orthologs differentially expressed exclusively in P. pacificus | |||||
|---|---|---|---|---|---|
| GO.ID | Term | Annotated | Significant | Expected | p-Value |
| GO:0006898 |
receptor-mediated endocytosis |
433 |
231 |
192.89 |
6.30E-05 |
| GO:0009792 |
embryo development ending in birth or egg hatching |
1535 |
740 |
683.81 |
0.00015 |
| GO:0002119 |
nematode larval development |
1123 |
549 |
500.27 |
0.00034 |
| GO:0040020 |
regulation of meiosis |
45 |
30 |
20.05 |
0.00219 |
| GO:0042127 |
regulation of cell proliferation |
45 |
30 |
20.05 |
0.00219 |
| GO:0006412 |
translation |
165 |
93 |
73.5 |
0.00691 |
| GO:0016246 |
RNA interference |
63 |
38 |
28.07 |
0.00812 |
| GO:0055114 |
oxidation-reduction process |
219 |
115 |
97.56 |
0.00912 |
| GO:0000003 |
reproduction |
1235 |
585 |
550.17 |
0.00934 |
| GO:0040007 |
growth |
1481 |
694 |
659.75 |
0.01358 |
| GO:0009396 |
folic acid-containing compound biosynthetic process |
5 |
5 |
2.23 |
0.01749 |
| GO:0009067 |
aspartate family amino acid biosynthesis |
10 |
8 |
4.45 |
0.02546 |
| GO:0009072 |
aromatic amino acid family metabolic process |
10 |
8 |
4.45 |
0.02546 |
| GO:0006732 |
coenzyme metabolic process |
41 |
27 |
18.26 |
0.0326 |
| GO:0051603 |
proteolysis involved in cellularprotein catabolic process |
36 |
24 |
16.04 |
0.03319 |
| GO:0006396 |
RNA processing |
72 |
40 |
32.07 |
0.03822 |
| GO:0006511 |
ubiquitin-dependent protein catabolic process |
29 |
18 |
12.92 |
0.04326 |
| GO:0006418 |
tRNA aminoacylation for protein translation |
33 |
20 |
14.7 |
0.04611 |
| GO:0015684 |
ferrous iron transport |
9 |
7 |
4.01 |
0.04679 |
| GO:0042026 |
protein refolding |
9 |
7 |
4.01 |
0.04679 |
| GO:0006399 |
tRNA metabolic process |
51 |
32 |
22.72 |
0.04805 |
|
GO:MF terms enriched in orthologs differentially expressed exclusively in P. pacificus | |||||
|
GO.ID |
Term |
Annotated |
Significant |
Expected |
p-Value |
| GO:0004298 |
threonine-type endopeptidase activity |
13 |
12 |
5.76 |
4.30E-04 |
| GO:0003899 |
DNA-directed RNA polymerase activity |
22 |
17 |
9.74 |
0.00168 |
| GO:0016491 |
oxidoreductase activity |
283 |
149 |
125.32 |
0.00192 |
| GO:0008026 |
ATP-dependent helicase activity |
49 |
32 |
21.7 |
0.00229 |
| GO:0050662 |
coenzyme binding |
83 |
48 |
36.76 |
0.00828 |
| GO:0003735 |
structural constituent of ribosome |
93 |
53 |
41.18 |
0.00847 |
| GO:0008168 |
methyltransferase activity |
67 |
39 |
29.67 |
0.01438 |
| GO:0016884 |
carbon-nitrogen ligase activity; with glutamine as amido-N-donor |
10 |
8 |
4.43 |
0.02443 |
| GO:0051082 |
unfolded protein binding |
28 |
18 |
12.4 |
0.02591 |
| GO:0030170 |
pyridoxal phosphate binding |
34 |
21 |
15.06 |
0.02977 |
| GO:0004812 |
aminoacyl-tRNA ligase activity |
34 |
21 |
15.06 |
0.02977 |
| GO:0003993 |
acid phosphatase activity |
12 |
9 |
5.31 |
0.03154 |
| GO:0031072 |
heat shock protein binding |
23 |
15 |
10.19 |
0.03483 |
| GO:0004190 |
aspartic-type endopeptidase activity |
9 |
7 |
3.99 |
0.04517 |
| GO:0015093 |
ferrous iron transmembrane transporter activity |
9 |
7 |
3.99 |
0.04517 |
| GO:0008483 | transaminase activity | 9 | 7 | 3.99 | 0.04517 |