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. Author manuscript; available in PMC: 2013 Apr 1.
Published in final edited form as: Kidney Int. 2012 Jun 13;82(8):878–891. doi: 10.1038/ki.2012.224

Table 1.

Primers used to amplify mRNAs based on published GenBank sequences for mice.

Primers Accession Number Sequence (Sense/Antisense) Product Size (bp) Cycle Number Annealing Temp (°C)
Mouse S1P1R NM_007901 5′-CGGTGTAGACCCAGAGTCCT-3′
5′-AGCAGCAGATGAGAATGAAC-3′
393 20 64
Mouse S1P2R NM_010333 5′-AAAACCAACCACTGGCTGTC-3′
5′-GAGTGGAACTTGCTGTT-3′
317 25 60
Mouse S1P3R NM_010101 5′-AAGCCTAGCGGGAGAGAAAC-3′
5′-GGCAATCAAAACCATCAGGT-3′
452 22 64
Mouse S1P4R NM_010102 5′-GCAGAAGTCTCCACGTCCTC-3′
5′-GCTGAGTGACCGAGAAGTCC-3′
403 23 62
Mouse S1P5R NM_053190 5′-ACACCAAATGCCCAGCTTAC-3′
5′-ACCAAGAGCACAGCCAAGTTC-3′
335 32 62
Mouse ICAM-1 X52264 5′-TGTTTCCTGCCTCTGAAGC-3′
5′-CTTCGTTTGTGATCCTCCG-3′
409 21 60
Mouse TNF-α X02611 5′-TACTGAACTTCGGGGTGATTGGTCC-3′
5′-CAGCCTTGTCCCTTGAAGAGAACC-3′
290 24 65
Mouse HSP27 NM_024441 5′-CCTAAGGTCTGGCATGGTA-3′
5′-AGGAAGCTCGTTGTTGAAGC-3′
373 25 66
Mouse SK1 NM_011451 (variant 1)
NM_025367 (variant 2)
5′-GATGCATGAGGTGGTGAATG-3′
5′-GCCCACTGTGAAACGAATC-3′
337 22 64
Human SK1 NM_021972 (variant 1)
NM_182965 (variant 2)
NM_001142601 (variant 3)
NM_001142602 (variant 4)
5′-ATCTCCTTCACGCTGATGC-3′
5′-GTGCAGAGACAGCAGGTTCA-3′
330 26 66
Human SK2 NM_020126 (variant 1)
NM_001204158 (variant 2)
NM_001204159 (variant 3)
NM_001204160 (variant 4)
5′-GGAGGAAGCTGTGAAGATGC-3′
5′-GCAGGTCAGACACAGAACGA-3′
482 22 66
Mouse and human GAPDH M32599 5′-ACCACAGTCCATGCCATCAC-3′
5′-CACCACCCTGTTGCTGTAGCC-3′
450 15 65
Cre transgene 5′-TGGGCGGCATGGTGCAAGTT-3′
5′-CGGTGCTAACCAGCGTTTTC-3′
466 30 61
S1P1RloxP 5′-GAGCGGAGGAAGTTAAAAGTG-3′
5′-CCTCCTAAGAGATTGCAGCAA-3′
WT: 200
LOX: 250
45 56

bp, base pairs; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; HSP27, heat shock protein 27; ICAM-1, intercellular adhesion molecule-1; S1PR, sphingosine 1-phosphate receptor; SK, sphingosine kinase; TNF-α, tumor necrosis factor alpha.