Table 1.
Primers | Accession Number | Sequence (Sense/Antisense) | Product Size (bp) | Cycle Number | Annealing Temp (°C) |
---|---|---|---|---|---|
Mouse S1P1R | NM_007901 | 5′-CGGTGTAGACCCAGAGTCCT-3′ 5′-AGCAGCAGATGAGAATGAAC-3′ |
393 | 20 | 64 |
Mouse S1P2R | NM_010333 | 5′-AAAACCAACCACTGGCTGTC-3′ 5′-GAGTGGAACTTGCTGTT-3′ |
317 | 25 | 60 |
Mouse S1P3R | NM_010101 | 5′-AAGCCTAGCGGGAGAGAAAC-3′ 5′-GGCAATCAAAACCATCAGGT-3′ |
452 | 22 | 64 |
Mouse S1P4R | NM_010102 | 5′-GCAGAAGTCTCCACGTCCTC-3′ 5′-GCTGAGTGACCGAGAAGTCC-3′ |
403 | 23 | 62 |
Mouse S1P5R | NM_053190 | 5′-ACACCAAATGCCCAGCTTAC-3′ 5′-ACCAAGAGCACAGCCAAGTTC-3′ |
335 | 32 | 62 |
Mouse ICAM-1 | X52264 | 5′-TGTTTCCTGCCTCTGAAGC-3′ 5′-CTTCGTTTGTGATCCTCCG-3′ |
409 | 21 | 60 |
Mouse TNF-α | X02611 | 5′-TACTGAACTTCGGGGTGATTGGTCC-3′ 5′-CAGCCTTGTCCCTTGAAGAGAACC-3′ |
290 | 24 | 65 |
Mouse HSP27 | NM_024441 | 5′-CCTAAGGTCTGGCATGGTA-3′ 5′-AGGAAGCTCGTTGTTGAAGC-3′ |
373 | 25 | 66 |
Mouse SK1 |
NM_011451 (variant 1) NM_025367 (variant 2) |
5′-GATGCATGAGGTGGTGAATG-3′ 5′-GCCCACTGTGAAACGAATC-3′ |
337 | 22 | 64 |
Human SK1 |
NM_021972 (variant 1) NM_182965 (variant 2) NM_001142601 (variant 3) NM_001142602 (variant 4) |
5′-ATCTCCTTCACGCTGATGC-3′ 5′-GTGCAGAGACAGCAGGTTCA-3′ |
330 | 26 | 66 |
Human SK2 |
NM_020126 (variant 1) NM_001204158 (variant 2) NM_001204159 (variant 3) NM_001204160 (variant 4) |
5′-GGAGGAAGCTGTGAAGATGC-3′ 5′-GCAGGTCAGACACAGAACGA-3′ |
482 | 22 | 66 |
Mouse and human GAPDH | M32599 | 5′-ACCACAGTCCATGCCATCAC-3′ 5′-CACCACCCTGTTGCTGTAGCC-3′ |
450 | 15 | 65 |
Cre transgene | 5′-TGGGCGGCATGGTGCAAGTT-3′ 5′-CGGTGCTAACCAGCGTTTTC-3′ |
466 | 30 | 61 | |
S1P1RloxP | 5′-GAGCGGAGGAAGTTAAAAGTG-3′ 5′-CCTCCTAAGAGATTGCAGCAA-3′ |
WT: 200 LOX: 250 |
45 | 56 |
bp, base pairs; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; HSP27, heat shock protein 27; ICAM-1, intercellular adhesion molecule-1; S1PR, sphingosine 1-phosphate receptor; SK, sphingosine kinase; TNF-α, tumor necrosis factor alpha.