TABLE 3.
Genes whose expression increased in M2X relative to both M2G and PYE
| Functional category or genef | Relative mRNA ratio
|
|
|---|---|---|
| M2X/M2G | M2X/PYE | |
| Degradation | ||
| CC0788, β-galactosidase, putativea,b,c | 3.46 | 3.66 |
| CC0819, dehydratase, IlvD/Edd familyd | 4.99 | 5.21 |
| CC0822, aldehyde dehydrogenase, aldAd | 11.6 | 11.9 |
| CC0945, oxidoreductase, glucose-methanol-choline family | 1.56 | 2.03 |
| CC1534, aspartate aminotransferase, aspc | 1.51 | 2.77 |
| CC2152, secreted protein, putativec | 8.75 | 9.25 |
| CC2153, polysaccharide deacetylased | 5.39 | 6.36 |
| CC2791, fatty aldehyde dehydrogenasec | 3.14 | 3.56 |
| CC2802, xylosidase/arabinosidase, xylB | 3.78 | 3.86 |
| CC2811, α-glucuronidasea,c | 2.60 | 2.99 |
| CC2812, mandelate racemase/muconate- lactonizing enzyme familyc | 2.58 | 2.75 |
| CC3054, xylosidase/arabinosidase, xarBa,c | 7.11 | 9.32 |
| CC3250, fructose-bisphosphate aldolase, class II, fbaA | 3.03 | 1.65 |
| Transport | ||
| CC0442, TonB-dependent receptora | 2.68 | 3.46 |
| CC0814, major facilitator family transporterc | 3.58 | 6.28 |
| CC0991, TonB-dependent receptora | 1.92 | 1.75 |
| CC0999, TonB-dependent receptor, putativea,c | 4.99 | 5.66 |
| CC1000, peptide transport system permease protein, SapC familye | 2.03 | 1.07 |
| CC2804, TonB-dependent receptora,c | 8.63 | 9.85 |
| CC2832, TonB-dependent receptora,c | 3.84 | 3.73 |
| CC3127, TonB-dependent receptora | 1.59 | 1.80 |
| CC3161, TonB-dependent receptora,c | 3.63 | 4.41 |
| CC3336, TonB-dependent receptor, putative | 2.46 | 3.97 |
| CC3461, TonB-dependent receptor | 3.16 | 4.38 |
| Other | ||
| CC0247, response regulator | 1.66 | 2.33 |
| CC0820, Smp-30/Cgr1 family proteind | 2.81 | 3.36 |
| CC0878, ATP-dependent Clp protease, ATP-binding subunit, clpB | 1.58 | 1.80 |
| CC0979, peptidyl-prolyl cis-trans isomerase A, ppiAa,c | 1.47 | 1.75 |
| CC1294, sensor histidine kinase | 2.17 | 2.23 |
| CC1363, proton pump, putative | 3.46 | 3.61 |
| CC1764, isocitrate lyase, aceA | 2.83 | 3.73 |
| CC1770, ubiquinol oxidase subunit IV, qoxD | 2.91 | 2.60 |
| CC1771, ubiquinol oxidase subunit III, qoxC | 3.92 | 2.57 |
| Uncharacterized or poorly characterized | ||
| CC0127, CC0505,a,c CC0553, CC0823,c CC0925,a CC1535,c CC1536, CC2519, CC2585,d CC2586,c CC2626, CC2645, CC2805,c CC2806,a,d CC2807, CC3055, CC3190, CC3335 | >1.4 | >1.4 |
a
Predicted to have a signal peptide.
b
Annotation came from COGs.
c
Contains a xylose induction motif upstream.
d
In a putative transcription unit that has a xylose induction motif upstream.
e
Annotation came from BLASTP.
f
Annotations are from GenBank (45) unless otherwise noted.