. 2004 Mar;186(5):1448–1461. doi: 10.1128/JB.186.5.1448-1461.2004

TABLE 4.

Occurrence of a putative xylose induction motif upstream of C. crescentus genes

Gene diverging from intergenic region	Motif sequence	Distance from start codon (bases)
CC0337	CTGCATGGGACCGGTAACAA	197
CC0505^c	TAGAATGTTATCGCTACCAT	24
CC0670	CGAAATGGTACCGCTAACAT	60
CC0785	AGAAATGATAGCGCTATCAA	211
CC0788^c	ATAGCTGGTAGCGCTACCAA	36
CC0801^e	CGCGTTGATAGCGCTAACAA	68
CC0814^a,c	CGCGCTGATACCGGTAACAC	−23
CC0821^b	AGACTTCGTACCGCTATATC	454
CC0823^a,c,d	CCACATGTTAGCGCTACCAA	88
CC0979^c/CC0980^b	AAAAAAGTGACCGCTACCAT	102/66
CC0988^e	CTTTCTGGTACCGCTACCGC	−3
CC0999^c	ACCGATGTTACCGCTAACTA	130
CC1534^c/CC1535^c	ACAAATGGTAGCGGTATCTT	183/100
CC2152^a,c	AGAAATGTTACCGCTAACGC	51
CC2357	ACAATTGATAGCGCTATCAT	110
CC2586^c	CACGATGTTACCGGTCACAT	105
CC2620^b	CCAATTGGTACCGCTACCAA	207
CC2622^e	CCAATTGGTACCGCTACCAA	148
CC2790^b/CC2791^c	CTATATGGGAGCGCTAACAT	120/50
CC2804^c/CC2805^c	ATCAATGGTAGCGCTACCTT	51/426
CC2811^c/CC2812^c	CCTAATGGTACCGGTACATC	117/120
CC2832^c	CAATCTGGTAGCGCTACCAA	82
CC3054^c	AGAAATGGTACCGGTCTCAT	114
CC3161^a,c	AGGGATGATATCGCTAAGAT	299
CC3323^a,e	CCTCATGGTAGCGGTCTCAC	79
Multilevel consensus sequence	AAAAATGGTACCGCTACCAT
Multilevel consensus sequence	CCCGTGGATA
	GTC
	T

Two promoters diverge from the intergenic region containing the motif. Only the gene shown was up in M2X.

No microarray data available.

Gene was up in M2X and met significance criteria.

Start codon prediction from Meisenzahl et al. (39). All other start codons are from GenBank (45).

Gene was up in M2X but did not meet significance criteria.