Table 2.
Nucleotide diversity indices of Y chromosomal loci and mtDNAs in gibbons
| Sequence | Genus or species | N | Sites analyzed (bp) | S | π% | θw% |
|---|---|---|---|---|---|---|
| Y loci |
All |
26 (10) |
6081 |
254 |
1.000 |
1.095 |
| |
Hylobates |
19 (6) |
6102 |
118 |
0.427 |
0.553 |
| |
Nomascus |
4 (3) |
6198 |
24 |
0.231 |
0.221 |
| |
Symphalangus |
3 (1) |
6192 |
2 |
0.022 |
0.022 |
| |
H. agilis |
3 |
6111 |
13 |
0.142 |
0.142 |
| |
H. lar |
10 |
6108 |
5 |
0.016 |
0.029 |
| |
H. moloch |
2 |
6123 |
2 |
0.033 |
0.033 |
| |
H. pileatus |
2 |
6109 |
32 |
0.524 |
0.524 |
| Mtgenomea |
All |
26 (10) |
11846 |
2570 |
6.022 |
5.685 |
| |
Hylobates |
19 (6) |
12970 |
1899 |
3.985 |
4.189 |
| |
Nomascus |
4 (3) |
14095 |
606 |
2.358 |
2.345 |
| |
Symphalangus |
3 (1) |
15325 |
91 |
0.396 |
0.396 |
| |
H. agilis |
3 |
15187 |
367 |
1.613 |
1.611 |
| |
H. lar |
10 |
14111 |
147 |
0.310 |
0.368 |
| |
H. moloch |
2 |
15414 |
108 |
0.701 |
0.701 |
| |
H. pileatus |
2 |
15374 |
307 |
2.000 |
2.000 |
| Cytochrome bb |
All |
85 (16) |
1140 |
429 |
9.030 |
7.505 |
| |
Hoolock |
5 (2) |
1140 |
40 |
1.930 |
1.684 |
| |
Hylobates |
39 (7) |
1140 |
256 |
5.392 |
5.311 |
| |
Nomascus |
37 (6) |
1140 |
184 |
4.128 |
3.866 |
| Symphalangus | 4 (1) | 1140 | 23 | 1.140 | 1.100 |
N is the number of individuals and in parentheses is the number of species sampled for each genus; S is the number of segregating sites; π is nucleotide diversity [77]; θw is estimated from S [78]. aCalculations were carried out using mtgenome sequences excluding the control regions from the 26 individuals [6]. bCalculations were carried out using 85 cytochrome b gene sequences (GenBank IDs of the cytochrome b genes were listed in [20]).