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. Author manuscript; available in PMC: 2012 Sep 18.
Published in final edited form as: J Chem Inf Model. 2011 Jul 1;51(7):1521–1527. doi: 10.1021/ci1004948

Table 5.

Compound library comparison performance using sparse vector algorithm on machine 3

Reference and Candidate Libraries Time (sec) Throughput (kTanimotos/sec)
A vs A 3.68 26636
A vs B 8.71 28158
A vs C 20.08 27658
B vs A 8.63 28413
B vs B 20.45 29963
B vs C 47.35 29320
C vs A 19.53 28429
C vs B 46.54 29831
C vs C 107.33 29301