Table 1.
IscU Variants [PDB] | WT [2L4X] | D39A [2KQK] |
---|---|---|
Distance constratins | ||
Intraresidue (i = j) | 218 | 305 |
Sequential (i–j = 1) | 446 | 559 |
Medium range (1 < (i–j) ≤ 5) | 416 | 525 |
Long range (i–j > 5) | 621 | 713 |
Total | 1701 | 2102 |
Dihedral angle constraints | ||
φ | 82 | 77 |
ψ | 83 | 77 |
Number of 1DNH RDC constraints | 22 | 16 |
Number of constraints per residue | 14.9 | 17.9 |
Number of long range constraints per residue | 4.9 | 5.6 |
CYANA target function (Å) | 1.00 (± 0.10) | 0.98 (± 0.18) |
Average number of distance constraints violations per conformer (> 0.2 Å) | 0 | 0 |
Average number of dihedral angle constraints violations per conformer (°) | 0 | 0 |
Average r.m.s.d for ordered residuesa to the mean structure (Å) | ||
Backbone atoms (N, Cα, C’) | 0.5 | 0.4 |
All atoms | 1.0 | 0.9 |
Ramachandran plot summary for ordered residuesa from PROCHECK 32 | ||
Most favoured regions | 91.4 % | 91.1 % |
Additionally allowed regions | 7.8 % | 8.8 % |
Generously allowed regions | 0.8 % | 0.1 % |
Disallowed regions | 0.0 % | 0.0 % |
PROCHECK raw scorea (φ and ψ/all dihedral angle) | −0.50/−0.75 | −0.47/−0.73 |
PROCHECK z-scorea (φ and ψ/all dihedral angle) | −1.65/−4.44 | −1.53/−4.32 |
Residues 24–34, 41–58, and 72–127 of IscU(WT) and residues 26–38, 40–62, and 68–27 of IscU(D39A) were considered ordered by the Protein Structure Validation Software Suite.28