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. Author manuscript; available in PMC: 2013 Jul 17.
Published in final edited form as: Biochemistry. 2012 Jul 2;51(28):5557–5563. doi: 10.1021/bi300579p

Table 1.

Statistics for the structure determinations of the structured states of E. coli apo-IscU(WT) and apo-IscU(D39A).

IscU Variants [PDB] WT [2L4X] D39A [2KQK]
Distance constratins
     Intraresidue (i = j) 218 305
     Sequential (i–j = 1) 446 559
     Medium range (1 < (i–j) ≤ 5) 416 525
     Long range (i–j > 5) 621 713
     Total 1701 2102
Dihedral angle constraints
     φ 82 77
     ψ 83 77
Number of 1DNH RDC constraints 22 16
Number of constraints per residue 14.9 17.9
Number of long range constraints per residue 4.9 5.6
CYANA target function (Å) 1.00 (± 0.10) 0.98 (± 0.18)
Average number of distance constraints violations per conformer (> 0.2 Å) 0 0
Average number of dihedral angle constraints violations per conformer (°) 0 0
Average r.m.s.d for ordered residuesa to the mean structure (Å)
     Backbone atoms (N, Cα, C’) 0.5 0.4
     All atoms 1.0 0.9
Ramachandran plot summary for ordered residuesa from PROCHECK 32
     Most favoured regions 91.4 % 91.1 %
     Additionally allowed regions 7.8 % 8.8 %
     Generously allowed regions 0.8 % 0.1 %
     Disallowed regions 0.0 % 0.0 %
PROCHECK raw scorea (φ and ψ/all dihedral angle) −0.50/−0.75 −0.47/−0.73
PROCHECK z-scorea (φ and ψ/all dihedral angle) −1.65/−4.44 −1.53/−4.32
a

Residues 24–34, 41–58, and 72–127 of IscU(WT) and residues 26–38, 40–62, and 68–27 of IscU(D39A) were considered ordered by the Protein Structure Validation Software Suite.28