Table 2. Predicted targets of miRNAs that have high abundance in L. chinense.
| MiRNA | Readscounts | Target in At and os 1 | Putative target in Liriodendron 2 |
| 447 | 1114 | 2-PGK | Nucleotide binding protein |
| 827 | 1165 | ND | Phosphoribosyltransferase |
| 5077 | 1302 | ND | ND |
| 164 | 1621 | NAC | ND |
| 2275 | 1653 | ND | Prolyl oligopeptidase protein |
| PPR protein | |||
| 473 | 1754 | ND | |
| 390 | 2091 | ta-siRNA | Binding protein |
| 894 | 2118 | ND | |
| 172 | 2165 | AP2 | Kinesin |
| Ribosomal protein | |||
| 395 | 2513 | APS | Vacuolar sorting protein |
| SO2 transporter | Cell division protein | ||
| Clp protease subunit | |||
| 160 | 3805 | ARF | Arginine serine-rich splicing protein |
| 398 | 4590 | CytC oxidase | SOD |
| CSD | Pollen protein | ||
| Transcription factor lim1 | |||
| 477 | 8170 | ND | Aldehyde dehydrogenase |
| Clathrin heavy chain | |||
| 393 | 8255 | b-ZIP | Sphingolipid desaturase |
| F-box | |||
| 168 | 10670 | AGO | HSP interaction protein |
| 169 | 15499 | HAP2 | Ring-finger protein |
| 26S proteasome subunit | |||
| Galactosyltransferase | |||
| 2118 | 16199 | ND | Methyltransferase |
| Ribosomal protein | |||
| Vacuolar ATP synthase | |||
| 171/170 | 20383 | SCL | Protein kinase |
| Methyltransferase protein | |||
| Calcium ion binding | |||
| Porin | |||
| 162 | 21640 | Dicer | Dipeptidyl peptidase |
| 167 | 39273 | ARF | ARF |
| Cytochrome p450 | |||
| Vascular protein | |||
| 482 | 61179 | ND | Eukaryotic initiation factor |
| Chalcone flavanone isomerase | |||
| 396 | 73058 | GRF | GRF |
| Ubiquitin protease 2b | |||
| Cyclin | |||
| 529 | 75594 | SBP | SBP |
| Chloroplast chaperonin | |||
| Serine protease | |||
| 156 | 100279 | SBP | SBP |
| Cytochrome P450 | |||
| 159/319 | 748920 | MYB | TCP |
| TCP | sRNA methyltransferase | ||
| Ribosome protein | |||
| Reverse transcriptase | |||
| 165/166 | 13078590 | HD-ZIPIII | HD-ZIP III |
| AP3-complex subunit | |||
| RNA polymerase subunit | |||
| Topoisomerase |
1
The miRNA targets of Arabidopsis thaliana and Oryza sativa mainly consults reviewer papers [19], [41], [59].
2
The GI number of the putative targets were provided in the Additional file 4.
Abbreviations: 2-PGK, 2-phophoglycerate kinase; AP2,?APETALA2; APS, ATP-sulfurylase; ARF, auxin response factors; CytC, cytochrome; CSD, copper superoxide dismutase; AGO, ARGONAUTE; SCL, scarecrow-like; GRF, growth regulating factor; SBP, SQUAMOSA-promoter binding protein; ta-siRNA, trans-acting short interfering RNA; SOD, Superoxide Dismutase; PPR: pentatricopeptide repeat; HSP, heat shock protein.