Table 3.
Classification of repetitive elements in the assembled sequence
| Class | Order | Superfamily | No. elements | Cumulative length |
|---|---|---|---|---|
| Retrotransposons |
|
|
116 |
663,798 (62.7%) |
| |
LTR_retrotransposons |
|
108 |
647,191 (61.1%) |
| |
|
Copia |
46 |
236,440 (22.3%) |
| |
|
Gypsy |
50 |
354,331 (33.4%) |
| |
LINE |
|
8 |
16,607 (1.6%) |
| DNA transposons |
|
|
92 |
267,505 (25.2%) |
| |
TIR |
|
90 |
266,656 (25.2%) |
| |
|
CACTA |
39 |
256,633 (24.2%) |
| |
|
Harbinger |
2 |
433 (0.0%) |
| |
|
Mutator |
4 |
3,609 (0.3%) |
| |
|
Mariner |
41 |
5,096 (0.5%) |
| Unclassified |
|
|
349 |
128,095 (12.1%) |
| Total | 557 | 1,059,398 (100%) |