Table 1.
ORFa | Splice junction | No. of readsb | Typec |
---|---|---|---|
ORF1 | D−3138∧A−2852 | 73 | P |
D−1938∧A−1810 | 15 | P | |
ORF6A | D+8474∧A+8715 | 3 | P |
ORF10 | D−38524∧A−16702 | 5 | P |
D−16289∧A−16187 | 50 | P | |
D−15971∧A−14866 | 68 | P | |
D−14481∧A−12487 | 49 | P | |
ORF19 | D+23432∧A+27106 | 1 | U |
D+26343∧A+27106 | 461 | P | |
D+26544∧A+27106 | 29 | P | |
ORF29 | D−61206∧A−43244 | 2 | U/P |
D−46317∧A−43244 | 81 | U | |
D−46054∧A−43244 | 3 | U | |
D−45795∧A−43244 | 12 | U | |
D−45017∧A−43244 | 11 | P | |
D−44470∧A−43244 | 11 | U | |
ORF51 | D−84760∧A−82797 | 16 | U |
D−84106∧A−82797 | 2 | U | |
D−83959∧A−82797 | 1 | U | |
D−83109∧A−82797 | 1,073 | P | |
D−83104∧A−82797 | 1,076 | U | |
ORF52 | D+80715∧A+82795 | 92 | P |
D+81069∧A+82795 | 19 | U | |
D+81947∧A+82795 | 445 | P | |
D+81958∧A+82795 | 331 | U | |
D+82357∧A+82795 | 3 | U | |
D+82648∧A+82795 | 1 | U | |
ORF59 | D+93589∧A+94994 | 119 | U |
D+93782∧A+94994 | 5 | U | |
ORF83 | D+93589∧A+125868 | 1 | U |
D+104012∧A+125868 | 6 | U | |
D+111704∧A+125868 | 1 | U | |
D+125696∧A+125868 | 530 | U | |
ORF71 | D−111668∧A−111583 | 289 | P |
D−111311∧A−111234 | 74 | P | |
ORF90 | D−149349∧A−149249 | 48 | P |
ORF92A | D+154521∧A+154652 | 5 | P |
ORF97 | D−166645∧A−162067 | 1 | U |
D−165222∧A−162067 | 1 | U | |
D−164962∧A−162067 | 1 | U | |
D−163629∧A−162067 | 8 | P | |
D−163486∧A−162067 | 2 | U | |
ORF100 | D−173459∧A−173267 | 36 | U |
D−172973∧A−172163 | 186 | P | |
D−171325∧A−169861 | 335 | P | |
ORF106 | D−199616∧A−182769 | 1 | U |
D−193915∧A−182769 | 1 | U/P | |
D−190222∧A−182769 | 6 | U | |
D−186050∧A−182769 | 2 | P | |
D−185616∧A−182769 | 10 | U | |
D−183047∧A−182769 | 1 | U | |
ORF112 | D+200109∧A+200193 | 79 | P |
ORF127 | D−223119∧A−222990 | 262 | P |
D−222245∧A−222143 | 76 | P | |
ORF131 | D−228535∧A−228420 | 18 | P |
D−228091∧A−227970 | 28 | P | |
ORF134 | D+234296∧A+234913 | 338 | P |
D+235104∧A+235251 | 133 | P |
Derived from data set S1 (set III) in the supplemental material.
The numbers of reads in the data set containing a 20-base sequence (10 bases on each side) at the splice junction. These provide estimates of relative abundance of spliced transcripts. Derived from data set S1 (set III) in the supplemental material.
P, splicing between predicted protein-coding exons (5′ UTR has appropriate ATG codon); U, splicing of a 5′ UTR to a predicted protein-coding exon (5′ UTR lacks appropriate ATG codon); U/P, not determined (5′ UTR has appropriate ATG codon but 5′ end was not mapped). Derived from the locations of splice sites (Table 1) and 5′ ends (Tables 2 and 3).