Table 1.

AngHV1 ORFs transcribed by splicing between protein-coding exons or between 5′ UTRs and protein-coding exons

ORFa	Splice junction	No. of readsb	Typec
ORF1	D−3138∧A−2852	73	P
	D−1938∧A−1810	15	P
ORF6A	D+8474∧A+8715	3	P
ORF10	D−38524∧A−16702	5	P
	D−16289∧A−16187	50	P
	D−15971∧A−14866	68	P
	D−14481∧A−12487	49	P
ORF19	D+23432∧A+27106	1	U
	D+26343∧A+27106	461	P
	D+26544∧A+27106	29	P
ORF29	D−61206∧A−43244	2	U/P
	D−46317∧A−43244	81	U
	D−46054∧A−43244	3	U
	D−45795∧A−43244	12	U
	D−45017∧A−43244	11	P
	D−44470∧A−43244	11	U
ORF51	D−84760∧A−82797	16	U
	D−84106∧A−82797	2	U
	D−83959∧A−82797	1	U
	D−83109∧A−82797	1,073	P
	D−83104∧A−82797	1,076	U
ORF52	D+80715∧A+82795	92	P
	D+81069∧A+82795	19	U
	D+81947∧A+82795	445	P
	D+81958∧A+82795	331	U
	D+82357∧A+82795	3	U
	D+82648∧A+82795	1	U
ORF59	D+93589∧A+94994	119	U
	D+93782∧A+94994	5	U
ORF83	D+93589∧A+125868	1	U
	D+104012∧A+125868	6	U
	D+111704∧A+125868	1	U
	D+125696∧A+125868	530	U
ORF71	D−111668∧A−111583	289	P
	D−111311∧A−111234	74	P
ORF90	D−149349∧A−149249	48	P
ORF92A	D+154521∧A+154652	5	P
ORF97	D−166645∧A−162067	1	U
	D−165222∧A−162067	1	U
	D−164962∧A−162067	1	U
	D−163629∧A−162067	8	P
	D−163486∧A−162067	2	U
ORF100	D−173459∧A−173267	36	U
	D−172973∧A−172163	186	P
	D−171325∧A−169861	335	P
ORF106	D−199616∧A−182769	1	U
	D−193915∧A−182769	1	U/P
	D−190222∧A−182769	6	U
	D−186050∧A−182769	2	P
	D−185616∧A−182769	10	U
	D−183047∧A−182769	1	U
ORF112	D+200109∧A+200193	79	P
ORF127	D−223119∧A−222990	262	P
	D−222245∧A−222143	76	P
ORF131	D−228535∧A−228420	18	P
	D−228091∧A−227970	28	P
ORF134	D+234296∧A+234913	338	P
	D+235104∧A+235251	133	P

^aDerived from data set S1 (set III) in the supplemental material.

^bThe numbers of reads in the data set containing a 20-base sequence (10 bases on each side) at the splice junction. These provide estimates of relative abundance of spliced transcripts. Derived from data set S1 (set III) in the supplemental material.

^cP, splicing between predicted protein-coding exons (5′ UTR has appropriate ATG codon); U, splicing of a 5′ UTR to a predicted protein-coding exon (5′ UTR lacks appropriate ATG codon); U/P, not determined (5′ UTR has appropriate ATG codon but 5′ end was not mapped). Derived from the locations of splice sites (Table 1) and 5′ ends (Tables 2 and 3).