Table 2.
Locations of 5′ and 3′ ends of AngHV1 RNAs identified by deep sequencing
| Position of enda | ORF |
|---|---|
| 5′ ends | |
| 8018 (−) | ORF5 |
| 11043 (+) | ORF8 |
| 12616 (+) | ORF11 |
| 13619 (+) | ORF12 |
| 19326 (−) | ORF16 |
| 20103 (−) | ORF17 |
| 28964 (+) | ORF20 |
| 33015 (+) | ORF22 |
| 34570 (+) | ORF23 |
| 35843 (+) | ORF23 internal |
| 37952 (+) | ORF25 |
| 38008 (+) | ORF25 internal |
| 39459 (+) | ORF26 |
| 43264 (−) | ORF29 |
| 46408 (−) | ORF29 5′ UTR |
| 48507 (+) | ORF32 |
| 49936 (−) | ORF33 |
| 55324 (+) | ORF35 |
| 57597 (−) | ORF36 |
| 67145 (+) | ORF42 |
| 69125 (−) | ORF43 |
| 75674 (+) | ORF47 |
| 78806 (+) | ORF48 internal |
| 79501 (+) | ORF48 internal |
| 80890 (+) | ORF50 |
| 81792 (+) | ORF52 |
| 82859 (−) | ORF51 |
| 83153 (−) | ORF51 5′ UTR |
| 83219 (−) | ORF51 5′ UTR |
| 84012 (+) | ORF53 |
| 84423 (+) | ORF53 internal |
| 93119 (−) | ORF57.5 internal |
| 93288 (−) | ORF57.5 |
| 99008 (+) | ORF64 |
| 109201 (−) | ORF68 |
| 109753 (−) | ORF69 |
| 110120 (−) | ORF70 internal |
| 110191 (−) | ORF70 internal |
| 115444 (+) | ORF75 |
| 118650 (−) | ORF78 internal |
| 118683 (−) | ORF78 internal |
| 118749 (−) | ORF78 |
| 118844 (+) | ORF79 |
| 123612 (−) | ORF81 |
| 123639 (−) | ORF81 |
| 134811 (+) | ORF83 internal |
| 138235 (−) | ORF85 |
| 146586 (−) | ORF88 internal |
| 156970 (+) | ORF94 |
| 159480 (−) | ORF95 |
| 162216 (−) | ORF97 |
| 167347 (+) | ORF99 |
| 173460 (+) | ORF104 |
| 176449 (+) | ORF104 internal |
| 177530 (+) | ORF105 |
| 187298 (+) | ORF108 |
| 192134 (+) | ORF109 internal |
| 197489 (+) | ORF111 |
| 202975 (−) | ORF114 |
| 202993 (+) | ORF115 |
| 203076 (+) | ORF115 internal |
| 206286 (−) | ORF116 |
| 207022 (−) | ORF117 |
| 208041 (−) | ORF118 |
| 211644 (+) | ORF121 |
| 211710 (+) | ORF121 |
| 212728 (+) | ORF122 |
| 213009 (+) | ORF122 |
| 214719 (+) | ORF124 |
| 220104 (+) | ORF126 |
| 220185 (+) | ORF126 |
| 3′ ends | |
| 585 (−) | ORF1 |
| 4497 (−) | ORF3 |
| 4833 (−) | ORF3 |
| 6015 (−) | ORF4 |
| 7383 (−) | ORF5 |
| 10144 (+) | ORF6A |
| 11840 (+) | ORF8 |
| 11846 (−) | ORF10 |
| 13505 (+) | ORF11 |
| 13578 (+) | ORF11 |
| 14475 (+) | ORF12 |
| 15968 (+) | ORF13 |
| 18324 (+) | ORF14, ORF15 |
| 18378 (−) | ORF16 |
| 19358 (−) | ORF17, ORF18 |
| 30878 (+) | ORF19, ORF20 |
| 33831 (+) | ORF21 |
| 37102 (+) | ORF22, ORF23 |
| 37959 (−) | None |
| 38517 (+) | ORF24, ORF25 |
| 40528 (−) | ORF28 |
| 40534 (+) | ORF26, ORF27 |
| 42200 (−) | ORF29 |
| 46557 (+) | ORF30 |
| 49351 (+) | ORF31, ORF32 |
| 49397 (+) | ORF31, ORF32 |
| 49464 (−) | ORF33 |
| 56376 (+) | ORF34, ORF35 |
| 56380 (−) | ORF36, ORF37, ORF38 |
| 62265 (+) | ORF39 |
| 68468 (+) | ORF40, ORF41, ORF42 |
| 68472 (−) | ORF43, ORF44 |
| 77464 (+) | ORF45, ORF46, ORF47 |
| 80349 (+) | ORF48 |
| 81840 (+) | ORF49, ORF50 |
| 81849 (−) | ORF51 |
| 84956 (+) | ORF52, ORF53 |
| 86174 (−) | ORF55 |
| 86178 (+) | ORF54 |
| 92178 (+) | ORF56 |
| 92183 (−) | ORF57, ORF57.5, ORF58 |
| 95585 (−) | ORF60, ORF61, ORF62 |
| 95631 (+) | ORF59 |
| 95638 (−) | ORF60, ORF61, ORF62 |
| 99973 (+) | ORF63, ORF64 |
| 99977 (−) | ORF65 |
| 103861 (+) | ORF66 |
| 108255 (−) | ORF68 |
| 108295 (+) | ORF67 |
| 109204 (−) | ORF69, ORF70 |
| 110348 (−) | ORF71 |
| 111957 (−) | ORF73, ORF74 |
| 116447 (+) | ORF75 |
| 116452 (−) | ORF76 |
| 116518 (+) | ORF75 |
| 116523 (−) | ORF76 |
| 117520 (−) | ORF77, ORF78 |
| 119726 (+) | ORF79 |
| 119734 (−) | ORF80 |
| 122033 (−) | ORF81, ORF82 |
| 136575 (−) | ORF85 |
| 136580 (+) | ORF83, ORF84 |
| 142583 (+) | ORF86 |
| 145080 (+) | ORF87 |
| 145410 (−) | ORF88, ORF89 |
| 148814 (−) | ORF90 |
| 152499 (+) | ORF91 |
| 155002 (+) | ORF92, ORF92A |
| 155830 (+) | ORF92B |
| 158201 (−) | ORF95 |
| 158264 (+) | ORF93, ORF94 |
| 159533 (−) | ORF96 |
| 160682 (−) | ORF97 |
| 168795 (+) | ORF98, ORF99 |
| 168802 (−) | ORF100 |
| 171336 (+) | ORF101 |
| 172962 (+) | ORF102 |
| 178357 (+) | ORF103, ORF104, ORF105 |
| 178392 (−) | ORF106 |
| 187348 (+) | ORF107 |
| 190548 (+) | ORF108 |
| 193002 (+) | ORF109 |
| 199700 (+) | ORF110, ORF111 |
| 202302 (+) | ORF112, ORF113 |
| 202307 (−) | ORF114 |
| 203433 (+) | ORF115 |
| 203448 (−) | ORF116 |
| 206376 (−) | ORF117 |
| 206983 (−) | ORF118 |
| 211537 (+) | ORF119, ORF120 |
| 213652 (+) | ORF121, ORF122 |
| 215604 (+) | ORF123, ORF124 |
| 219125 (+) | ORF125 |
| 221069 (+) | ORF126 |
| 221281 (−) | ORF127 |
| 224617 (−) | ORF130 |
| 238020 (+) | ORF134 |
a
+, rightward transcription; −, leftward transcription. Duplicates in the direct terminal repeat are not included. Some ends exhibited heterogeneous distribution over closely located nucleotides, and in these instances, the most frequently identified location is listed.